Package: gDRplots
Title: 'gDRplots'
Version: 0.99.3
Date: 2026-10-01
Authors@R: c(
             person("Marc", "Hafner", role=c("aut"), comment = c(ORCID = "0000-0003-1337-7598")),
             person("Janina", "Smola", role = "aut"),
             person("Bartosz", "Czech", role = "aut", comment = c(ORCID = "0000-0002-9908-3007")),
             person("Dariusz", "Scigocki", role = "aut"),
             person("Arkadiusz", "Gladki", role=c("aut", "cre"), email="gladki.arkadiusz@gmail.com",
                   comment = c(ORCID = "0000-0002-7059-6378"))
             )
Description: gDRplots provides static visualization functions and
        dedicated helpers for the gDR drug response platform. Designed
        for high-throughput screening (HTS), pharmacogenomics, and
        chemical genomics research, it enables comprehensive analysis
        of single-agent, co-dilution, and drug combination cell
        viability assays. The package supports quality control (plate
        layouts, control mapping), data normalization inspection,
        dose-response curves, distribution boxplots, drug synergy
        heatmaps with overlaid isobolograms, and combination index
        plots. Additionally, it integrates with PRISM and DepMap
        datasets to generate volcano plots and correlation scatter
        plots for molecular feature associations.
License: Artistic-2.0
biocViews: Software, Visualization, QualityControl, Normalization,
        CellBasedAssays, Pharmacogenomics, MicrotitrePlateAssay
Imports: ashr, checkmate, data.table, DT, fgsea, ggplot2 (>= 4.0.0),
        ggrepel, ggtext, gDRutils (>= 1.6.0), patchwork, pheatmap,
        RColorBrewer, rstudioapi, tools, WGCNA
Suggests: BiocStyle, colorspace, gDRtestData (>= 1.6.0), gDRstyle (>=
        1.6.0), heatmaply, jsonlite, knitr, matrixStats, mockery,
        purrr, readxl, rlang, R.utils, scales, S4Vectors,
        SummarizedExperiment, svglite, qs2, testthat, withr
VignetteBuilder: knitr
URL: https://github.com/gdrplatform/gDRplots,
        https://gdrplatform.github.io/gDRplots/
BugReports: https://github.com/gdrplatform/gDRplots/issues
Encoding: UTF-8
LazyLoad: yes
Config/roxygen2/version: 8.0.0
RoxygenNote: 7.3.1
Config/pak/sysreqs: cmake make libicu-dev libjpeg-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev libnode-dev zlib1g-dev
Repository: https://biocstaging.r-universe.dev
Date/Publication: 2026-10-01 11:31:46 UTC
RemoteUrl: https://github.com/BiocStaging/gDRplots
RemoteRef: HEAD
RemoteSha: 04d0c5c7aabf56091916b0d4077dfb9b73762499
NeedsCompilation: no
Packaged: 2026-10-01 13:42:56 UTC; root
Author: Marc Hafner [aut] (ORCID: <https://orcid.org/0000-0003-1337-7598>),
  Janina Smola [aut],
  Bartosz Czech [aut] (ORCID: <https://orcid.org/0000-0002-9908-3007>),
  Dariusz Scigocki [aut],
  Arkadiusz Gladki [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-7059-6378>)
Maintainer: Arkadiusz Gladki <gladki.arkadiusz@gmail.com>