NEWS
geneticumap 1.0.0
New Features
- Automated Parameter Optimization: Systematically tunes normalization scale factors, number of variable features, PCA dimensions, clustering resolution, UMAP neighbors, and minimum distance.
- Self-Adaptive Evolutionary Search: Utilizes adaptive mutation rates that evolve alongside parameters to navigate complex parameter landscapes efficiently.
- Parallel Processing: Integrated with
parallelMap to evaluate candidate parameter configurations concurrently.
- Comprehensive Artifact Generation: Exports winner parameters as JSON, cluster and UMAP coordinate tables, static diagnostic plots, and interactive HTML UMAP visualizations with top cluster marker genes.
Minor Changes & Enhancements
Bug Fixes