Package: ggwas
Title: Modern 'ggplot2' Visualizations for Genome-Wide Association
        Studies
Version: 0.99.5
Authors@R: person("Bartosz", "Czech", email = "bartosz.w.czech@gmail.com",
                  role = c("aut", "cre"), comment = c(ORCID = "0000-0002-9908-3007"))
Description: Create publication-ready visualizations for genome-wide
        association studies. Provides 20 plot types including
        Manhattan, QQ, Miami, locus zoom, PheWAS, colocalization,
        fine-mapping, genetic correlation, SNP density, and
        density-signal comparison plots. Reads PLINK, REGENIE, GCTA,
        and GEMMA formats natively. All plot functions return 'ggplot2'
        objects for full customization. Smart downsampling handles
        datasets with 10 million+ variants.
License: MIT + file LICENSE
URL: https://github.com/bczech/ggwas, https://bczech.github.io/ggwas/
BugReports: https://github.com/bczech/ggwas/issues
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
Depends: R (>= 4.5.0)
Imports: cli, data.table (>= 1.14.0), ggplot2 (>= 3.5.0), ggrepel (>=
        0.9.0), grDevices, grid, gridExtra, patchwork (>= 1.2.0),
        RColorBrewer, rlang (>= 1.0.0), scales, stats, utils, withr,
        GenomicRanges, IRanges, S4Vectors
Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
biocViews: Visualization, GenomeWideAssociation, Annotation,
        DataImport, Software
Config/testthat/edition: 3
Config/roxygen2/version: 8.0.0
Repository: https://biocstaging.r-universe.dev
Date/Publication: 2026-07-23 17:01:11 UTC
RemoteUrl: https://github.com/BiocStaging/ggwas
RemoteRef: HEAD
RemoteSha: 10e028ecaa15759f10b7e0f18d52d4bcee424849
NeedsCompilation: no
Packaged: 2026-07-23 17:11:04 UTC; root
Author: Bartosz Czech [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-9908-3007>)
Maintainer: Bartosz Czech <bartosz.w.czech@gmail.com>