To cite hcocena, please use the method paper and, where the protocol was followed, the STAR Protocols paper:

Oestreich M, Holsten L, Agrawal S, Dahm K, Koch P, Jin H, Becker M, Ulas T (2022). hCoCena: horizontal integration and analysis of transcriptomics datasets. Bioinformatics 38(20):4727-4734.<doi:10.1093/bioinformatics/btac589>

Holsten L, Dahm K, Oestreich M, Becker M, Ulas T (2024). hCoCena: A toolbox for network-based co-expression analysis and horizontal integration of transcriptomic datasets. STAR Protocols 5(1):102922.<doi:10.1016/j.xpro.2024.102922>

Corresponding BibTeX entries:

  @Article{,
    title = {hCoCena: horizontal integration and analysis of
      transcriptomics datasets},
    author = {Marie Oestreich and Lisa Holsten and Shobhit Agrawal and
      Kilian Dahm and Philipp Koch and Han Jin and Matthias Becker and
      Thomas Ulas},
    journal = {Bioinformatics},
    year = {2022},
    volume = {38},
    number = {20},
    pages = {4727-4734},
    doi = {10.1093/bioinformatics/btac589},
  }

  @Article{,
    title = {hCoCena: A toolbox for network-based co-expression
      analysis and horizontal integration of transcriptomic datasets},
    author = {Lisa Holsten and Kilian Dahm and Marie Oestreich and
      Matthias Becker and Thomas Ulas},
    journal = {STAR Protocols},
    year = {2024},
    volume = {5},
    number = {1},
    pages = {102922},
    doi = {10.1016/j.xpro.2024.102922},
  }