Package: hmagmaR
Type: Package
Title: Incorporation of chromatin interaction and epigenetic profiles
        to predict risk genes
Version: 0.99.3
Authors@R: person("Aydan", "Asgarova", email = "aydan.asgarova00@gmail.com",
    role = c("aut", "cre"))
Description: Combines chromatin interaction (e.g. PLAC-seq/Hi-C) data
        with regulatory region annotations (e.g. promoters, enhancers,
        H3K27ac) to link non-coding GWAS SNPs to their putative target
        genes, producing MAGMA-compatible gene annotation files for
        downstream gene-level association testing.
License: MIT + file LICENSE
URL: https://github.com/aydanasg/hmagmaR
BugReports: https://github.com/aydanasg/hmagmaR/issues
Encoding: UTF-8
RoxygenNote: 7.3.1
biocViews: Software, Epigenetics, ChIPSeq, GeneRegulation, SNP,
        GenomeAnnotation, FunctionalGenomics, GeneTarget, HiC
Imports: TxDb.Hsapiens.UCSC.hg19.knownGene (>= 3.2.2), org.Hs.eg.db (>=
        3.18.0), GenomicRanges (>= 1.54.1), IRanges (>= 2.36.0),
        S4Vectors (>= 0.40.2), ChIPseeker (>= 1.38.0), stats
Suggests: knitr, rmarkdown, BiocStyle, testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev libglpk-dev make libbz2-dev libicu-dev
        liblzma-dev libpng-dev libuv1-dev libxml2-dev libssl-dev
        xz-utils zlib1g-dev
Repository: https://biocstaging.r-universe.dev
Date/Publication: 2026-08-13 12:10:03 UTC
RemoteUrl: https://github.com/BiocStaging/hmagmaR
RemoteRef: HEAD
RemoteSha: 22147490bb0465d9d4fd8b6bd80cee330f585052
NeedsCompilation: no
Packaged: 2026-10-12 13:45:05 UTC; root
Author: Aydan Asgarova [aut, cre]
Maintainer: Aydan Asgarova <aydan.asgarova00@gmail.com>
Depends: R (>= 3.5.0)