Package: loopcityData
Title: Experimental Data for the loopcity Package
Version: 0.99.0
Authors@R: c(
    person("Sarah", "Parker", role = c("aut", "cre"),
           email = "smp3800@gmail.com",
           comment = c(ORCID = "0000-0002-2700-3979")),
    person("JP", "Flores", role = "aut",
           email = "jflores@unc.edu"))
Description: Provides Hi-C loop calls and chromatin interaction data
        used in examples and vignettes for the loopcity package.
        Includes GM12878 Hi-C loop calls at 10 kb resolution (Rao et
        al. 2014, GSE63525), shipped directly as GInteractions objects.
        K562 Hi-C contact matrices and CTCF and H3K27ac ChIP-seq signal
        tracks from Bond et al. 2023 (GSE214123, GSE213908) are hosted
        on ExperimentHub and retrieved on demand.
License: CC BY 4.0
Encoding: UTF-8
Depends: R (>= 4.5.0), ExperimentHub
Imports: AnnotationHub, InteractionSet
Suggests: loopcity, knitr, rmarkdown, BiocStyle
VignetteBuilder: knitr
biocViews: ExperimentHub, ExperimentData, Homo_sapiens_Data,
        SequencingData
RoxygenNote: 7.3.2
BugReports: https://github.com/jpflores-13/loopcityData/issues
URL: https://github.com/jpflores-13/loopcityData
Config/pak/sysreqs: libicu-dev libpng-dev libssl-dev zlib1g-dev
Repository: https://biocstaging.r-universe.dev
Date/Publication: 2026-06-15 19:55:34 UTC
RemoteUrl: https://github.com/BiocStaging/loopcityData
RemoteRef: HEAD
RemoteSha: e6541c038f810893ce044c9fbec9be966245208f
NeedsCompilation: no
Packaged: 2026-10-07 09:14:27 UTC; root
Author: Sarah Parker [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-2700-3979>),
  JP Flores [aut]
Maintainer: Sarah Parker <smp3800@gmail.com>