Package 'loopcityData'
| Title: |
Experimental Data for the loopcity Package |
| Description: |
Provides Hi-C loop calls and chromatin interaction data
used in examples and vignettes for the loopcity package.
Includes GM12878 Hi-C loop calls at 10 kb resolution (Rao et
al. 2014, GSE63525), shipped directly as GInteractions objects.
K562 Hi-C contact matrices and CTCF and H3K27ac ChIP-seq signal
tracks from Bond et al. 2023 (GSE214123, GSE213908) are hosted
on ExperimentHub and retrieved on demand. |
| Authors: |
Sarah Parker [aut, cre] (ORCID:
<https://orcid.org/0000-0002-2700-3979>),
JP Flores [aut] |
| Maintainer: |
Sarah Parker <[email protected]> |
| License: |
CC BY 4.0 |
| Version: |
0.99.0 |
| Built: |
2026-06-16 00:32:37 UTC |
| Source: |
https://github.com/BiocStaging/loopcityData |
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