Package: methylTFRAnnotationMm10
Title: methylTFR Annotations for mm10
Description: Precomputed transcription factor binding sites, motif GC
        frequency tables and a genome-wide GC distribution for use with
        the methylTFR package. Binding sites are genome-wide motif
        matches extended to the footprint window methylTFR reads
        across; the GC tables record how each motif's sites distribute
        over genome-wide GC quintiles, which is what allows a deviation
        score to be corrected for sequence composition. The data are
        hosted on AnnotationHub and retrieved on first use; this
        package provides the accessors and the documentation.
Authors@R: c(
    person("Irem B.", "Gunduz", , "irembgunduz@gmail.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0003-2641-0916")),
    person("ERA-NET Transcan-Neu III - EPILUNAR", role = "fnd",
           comment = "Grant 01KT2409"),
    person("Saarland University", role = "fnd",
           comment = "NanoBioMed Young Investigator Grant")
  )
License: Artistic-2.0
Encoding: UTF-8
Version: 0.99.12
Depends: R (>= 4.5.0)
Imports: AnnotationHub, GenomicRanges, stats
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), BiocStyle
VignetteBuilder: knitr
biocViews: AnnotationData, AnnotationHub, FunctionalAnnotation,
        SequenceAnnotation, Mus_musculus
BugReports: https://github.com/EpigenomeInformatics/methylTFRAnnotationMm10/issues
URL: https://github.com/EpigenomeInformatics/methylTFRAnnotationMm10
Roxygen: list(markdown = FALSE)
RoxygenNote: 7.3.3
Config/testthat/edition: 3
Config/pak/sysreqs: libicu-dev libpng-dev libssl-dev zlib1g-dev
Repository: https://biocstaging.r-universe.dev
Date/Publication: 2026-10-02 11:38:00 UTC
RemoteUrl: https://github.com/BiocStaging/methylTFRAnnotationMm10
RemoteRef: HEAD
RemoteSha: e0358becbaf5fe5651d6bc00128549f7301306d5
NeedsCompilation: no
Packaged: 2026-10-02 12:57:10 UTC; root
Author: Irem B. Gunduz [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-2641-0916>),
  ERA-NET Transcan-Neu III - EPILUNAR [fnd] (Grant 01KT2409),
  Saarland University [fnd] (NanoBioMed Young Investigator Grant)
Maintainer: Irem B. Gunduz <irembgunduz@gmail.com>