Changes in version 0.99.12                       

Changes in response to the second review:

  - Depends on R (>= 4.6.0).
  - Input checking: an invalid methylTFRAnnotationMm10.datadir option or
    METHYL_TFRANNOTATION_Mm10_DIR value (not a single string, or a
    directory that does not exist) now gives an informative error. Tests
    added.
  - Added inst/extdata/README.md describing metadata.csv and each
    AnnotationHub resource.
  - The vignette's Installation section also installs methylTFR.

                       Changes in version 0.99.11                       

  - BiocCheck fixes: the data help pages (?motif_gcfreq, ?tf_bindsites,
    ?genomewide_GC) have a \value section, and their examples run
    (reading metadata.csv) instead of using \dontrun.
  - Shortened vignette lines to at most 80 characters.
  - Added CITATION.cff.

                       Changes in version 0.99.10                       

Changes in response to the Bioconductor review:

  - Authors@R lists the funders (ERA-NET Transcan-Neu III - EPILUNAR,
    grant 01KT2409; Saarland University NanoBioMed Young Investigator
    Grant) with the fnd role.

  - New package help page ?methylTFRAnnotationMm10 summarising the
    resources and linking the accessors.

  - New help pages describing the structure of each AnnotationHub
    resource listed in inst/extdata/metadata.csv: ?motif_gcfreq
    (?altius_motif_gcfreq, ...), ?tf_bindsites (?altius_tf_bindsites,
    ...) and ?genomewide_GC (?genomewide_GC_mm10).

  - New exported availableMotifSets() listing the accepted motif sets.

  - getGenomeGC() accepts "mm10" (or no argument) and gives an
    informative error for any other assembly.

  - biocViews: Mus_musculus instead of Homo_sapiens.

  - Unit tests now cover the local-directory and AnnotationHub code
    paths (the hub is mocked, so the tests run offline).

  - The vignette no longer hides code: the synthetic example data are
    built in a visible chunk, every chunk is evaluated, and each
    accessor's output is printed and explained.

                       Changes in version 0.99.9                        

  - Initial submission to Bioconductor.

  - Provides transcription factor binding sites, motif GC frequency
    tables and a genome-wide GC distribution for mm10, for the
    jaspar2020, cisbpv2 and altius motif sets.

  - Resources are hosted on AnnotationHub and downloaded on first use.

  - The genome-wide GC table uses non-overlapping 30 nt windows binned
    into five genome-wide GC quintiles. Bin boundaries are recorded with
    the object so that the motif frequency tables and the genome table
    are always binned on the same scale.

  - Fixes on NOTES from biocchecks

  - Added 4 spaces as suggested