Package: mgcca
Type: Package
Title: Generalized Canonical Correlation Analysis with Missing
        Individuals
Version: 0.99.6
Date: 2026-10-02
Authors@R: 
  c(  person( given = "Dolors",
              family = "Pelegri-Siso",
              email = "dolors.pelegri@isglobal.org",
              role = c("aut", "cre"),
              comment = c(ORCID = "0000-0002-5993-3003")),
      person( given = "Isaac",
              family = "Subirana",
              role = c("aut")),
      person( given = "Juan R.",
              family = "Gonzalez",
              email = "juanr.gonzalez@isglobal.org",
              role = c("aut"),
              comment = c(ORCID = "0000-0003-3267-2146"))
    )
Description: Implements Generalized Canonical Correlation Analysis
        (GCCA) with missing individuals (whole missing rows; van de
        Velden and Bijmolt, 2006) for multi-block omics integration.
        The package operates directly on HDF5 matrices via the
        BigDataStatMeth C++ API to scale computations; R functions are
        thin wrappers around the C++ core.
Depends: R (>= 4.5.0)
Imports: BigDataStatMeth (>= 2.0.6), MASS, rlang (>= 1.1.0), withr,
        Rcpp (>= 1.0.6), ggplot2 (>= 3.4.0), ggthemes, impute,
        SummarizedExperiment, graphics, grDevices, grid, methods,
        stats, utils
LinkingTo: Rcpp, RcppEigen, Rhdf5lib, BigDataStatMeth, BH
Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0),
        MultiAssayExperiment, Biobase, wordcloud, GenomicRanges,
        IRanges, BiocGenerics, made4, RSpectra, GenomeInfoDb,
        curatedTCGAData, TCGAutils, TxDb.Hsapiens.UCSC.hg19.knownGene,
        org.Hs.eg.db
SystemRequirements: GNU make, C++17
License: MIT + file LICENSE
URL: https://isglobal-brge.github.io/mgcca/,
        https://github.com/isglobal-brge/mgcca,
        http://brge.isglobal.org
BugReports: https://github.com/isglobal-brge/mgcca/issues
biocViews: StatisticalMethod, DimensionReduction, PrincipalComponent,
        GeneExpression, Transcriptomics, Epigenetics, Metabolomics
VignetteBuilder: knitr
Config/testthat/edition: 3
Encoding: UTF-8
RoxygenNote: 7.3.3
NeedsCompilation: yes
Config/pak/sysreqs: make libicu-dev zlib1g-dev
Repository: https://biocstaging.r-universe.dev
Date/Publication: 2026-10-03 11:29:27 UTC
RemoteUrl: https://github.com/BiocStaging/mgcca
RemoteRef: HEAD
RemoteSha: 4476903d1eae19f5619cfb33732df3cd4035213d
Packaged: 2026-10-03 14:05:12 UTC; root
Author: Dolors Pelegri-Siso [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-5993-3003>),
  Isaac Subirana [aut],
  Juan R. Gonzalez [aut] (ORCID: <https://orcid.org/0000-0003-3267-2146>)
Maintainer: Dolors Pelegri-Siso <dolors.pelegri@isglobal.org>