Package: multipletR
Type: Package
Title: Adaptive Detection of Human-Mouse Multiplets in PDX Single-Cell
        Data
Version: 0.99.0
Authors@R: 
    person("Alexandra", "Gerveni", email = "alexandra.gerveni@hotmail.com",
           role = c("aut", "cre"),
           comment = c(ORCID = "0009-0004-5428-5889"))
Description: Detects human-mouse multiplets in patient-derived
        xenograft (PDX) single-cell RNA-seq data using an adaptive
        threshold method that does not assume a fixed species
        proportion. Takes a 10x CellRanger GEM classification file and
        returns the data with added multiplet classifications, with
        optional diagnostic plots and helpers to annotate a Seurat or
        SingleCellExperiment object with multiplet classifications or
        remove multiplets from it.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Imports: diptest, ggplot2, methods, patchwork, scales,
        SingleCellExperiment, stats, SummarizedExperiment, utils
Suggests: Seurat, knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
biocViews: SingleCell, RNASeq, Preprocessing, QualityControl,
        Transcriptomics
URL: https://github.com/Alex05a/multipletR
BugReports: https://github.com/Alex05a/multipletR/issues
Config/testthat/edition: 3
Config/pak/sysreqs: zlib1g-dev
Repository: https://biocstaging.r-universe.dev
Date/Publication: 2026-07-14 21:41:08 UTC
RemoteUrl: https://github.com/BiocStaging/multipletR
RemoteRef: HEAD
RemoteSha: 053f1b5922b993ef22856b6d2614a6f43b100eb9
NeedsCompilation: no
Packaged: 2026-07-16 20:40:07 UTC; root
Author: Alexandra Gerveni [aut, cre] (ORCID:
    <https://orcid.org/0009-0004-5428-5889>)
Maintainer: Alexandra Gerveni <alexandra.gerveni@hotmail.com>