Package: ontoProc2
Date: 2026-03-16
Title: Ontology Facilities Based on INCAtools Semantic SQL
Version: 0.99.24
Authors@R: 
    c(person(
        "Vincent", "Carey", role = c("aut", "cre"),
        email = "stvjc@channing.harvard.edu",
        comment = c(ORCID = "0000-0003-4046-0063")),
      person("Anthropic-Claude", "Sonnet4.6", role="eng"),
      person(
        "NIH NHGRI 2U24HG004059-17",
        role = "fnd"
      )
     )
Description: This package provides ontology facilities based on
        INCAtools Semantic SQL.  Tooling is provided to retrieve and
        cache SQLite databases representing curated ontologies.
        ontologyIndex ontology_index instances can be produced.
        Anthropic's Claude was used in the development of S7 classes
        and methods and in the production of documentation.
License: Artistic-2.0
Encoding: UTF-8
Depends: R (>= 4.5.0)
Imports: RSQLite, DBI, BiocFileCache, R.utils, dplyr, ontologyIndex,
        ontologyPlot, graph, Rgraphviz, methods, S7, utils, httr2,
        xml2, digest
Suggests: knitr, testthat, BiocStyle, DT, GO.db, AnnotationDbi, stringr
VignetteBuilder: knitr
biocViews: Infrastructure, DataRepresentation, Pathways, SingleCell
URL: https://github.com/vjcitn/ontoProc2
BugReports: https://github.com/vjcitn/ontoProc2/issues
Config/roxygen2/version: 8.0.0
Roxygen: list(markdown = TRUE)
Config/pak/sysreqs: libicu-dev libxml2-dev libssl-dev zlib1g-dev
Repository: https://biocstaging.r-universe.dev
Date/Publication: 2026-06-28 00:52:00 UTC
RemoteUrl: https://github.com/BiocStaging/ontoProc2
RemoteRef: HEAD
RemoteSha: 5198642dfe08002ea2a20dea0cbc8819760625f6
NeedsCompilation: no
Packaged: 2026-06-28 05:25:56 UTC; root
Author: Vincent Carey [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-4046-0063>),
  Anthropic-Claude Sonnet4.6 [eng],
  NIH NHGRI 2U24HG004059-17 [fnd]
Maintainer: Vincent Carey <stvjc@channing.harvard.edu>