Package: orthoRibbon
Type: Package
Title: Ribbon-Diagram Visualization of Orthologous Genes Across Species
Version: 0.99.0
Authors@R: 
    c(person(given="Jianhong", family="Ou", email="jou@morgridge.org", 
        role=c("aut", "cre"), comment=c(ORCID="0000-0002-8652-2488")),
        person(given='Kenneth', family='Poss', email='kposs@morgridge.org',
        role=c('aut', 'fnd')))
Description: OrthoRibbon is a visualization toolkit for displaying
        orthologous gene relationships across species using
        ribbon-based diagrams. It enables intuitive comparison of
        conserved genes and genomic correspondence between chromosomes
        or genomic regions. The package supports flexible input formats
        and produces publication-quality figures for comparative
        genomics and evolutionary analysis.
License: GPL-3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
VignetteBuilder: knitr
biocViews: Visualization, Annotation, ComparativeGenomics
Depends: R (>= 4.5.0)
Imports: AnnotationDbi, BiocGenerics, biomaRt, dplyr,
        geneClusterPattern, GenomeInfoDb, GenomicRanges, ggforce,
        ggplot2, ggrepel, methods, rlang, S4Vectors, Seqinfo, stats,
        seriation
Suggests: BiocStyle, knitr, org.Hs.eg.db, rmarkdown, testthat
Enhances: ChIPpeakAnno
URL: https://github.com/jianhong/orthoRibbon
BugReports: https://github.com/jianhong/orthoRibbon/issues
Config/roxygen2/version: 8.1.0
Config/pak/sysreqs: cmake libfontconfig1-dev libfreetype6-dev make
        libbz2-dev libicu-dev liblzma-dev libpng-dev libuv1-dev
        libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://biocstaging.r-universe.dev
Date/Publication: 2026-10-02 15:15:28 UTC
RemoteUrl: https://github.com/BiocStaging/orthoRibbon
RemoteRef: HEAD
RemoteSha: 1dcc5e520e81c1b1252694bf3ecdcf72924ec9e2
NeedsCompilation: no
Packaged: 2026-10-02 18:43:54 UTC; root
Author: Jianhong Ou [aut, cre] (ORCID: <https://orcid.org/0000-0002-8652-2488>),
  Kenneth Poss [aut, fnd]
Maintainer: Jianhong Ou <jou@morgridge.org>