Package: panpathAudit
Type: Package
Title: Audit Sequence Preservation in GFA Traversals
Version: 0.99.2
Authors@R: 
    c(person(given = "Anestis",
             family = "Gkanogiannis",
             role = c("aut", "cre"),
             email = "anestis@gkanogiannis.com",
             comment = c(ORCID = "0000-0002-6441-0688"))
    )
Description: Audits source FASTA sequences against named paths and
        coordinate-aware walks in GFA files. It reports exact recovery,
        divergence coordinates, digests, and optional base-level
        statistics. Graph topology is not validated.
License: MIT + file LICENSE
Encoding: UTF-8
Language: en-US
Depends: R (>= 4.5.0)
Imports: methods, Rcpp, S4Vectors
LinkingTo: Rcpp
Suggests: BiocCheck, BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
SystemRequirements: C++20, zlib
biocViews: Alignment, DataImport, GenomeAssembly, Genetics, Sequencing
URL: https://github.com/gkanogiannis/panpathAudit
BugReports: https://github.com/gkanogiannis/panpathAudit/issues
NeedsCompilation: yes
RoxygenNote: 8.1.0
Config/testthat/edition: 3
Config/pak/sysreqs: zlib1g-dev
Repository: https://biocstaging.r-universe.dev
Date/Publication: 2026-09-19 12:40:17 UTC
RemoteUrl: https://github.com/BiocStaging/panpathAudit
RemoteRef: HEAD
RemoteSha: 03e80adec188ca08919043877f22bcfb61dd6deb
Packaged: 2026-09-19 14:38:20 UTC; root
Author: Anestis Gkanogiannis [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-6441-0688>)
Maintainer: Anestis Gkanogiannis <anestis@gkanogiannis.com>