Package: pepVet
Type: Package
Title: Evaluate Proteolytic Digests for Proteomics Workflows
Version: 0.99.0
Authors@R: 
    person("Enes K. Ergin", email = "eneskemalergin@gmail.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-9810-7399"))
Description: Simulates proteolytic digestion, scores the resulting
        peptides for LC-MS/MS suitability, compares candidate enzymes,
        and reports digest quality at the protein level. Supports 40
        cleaver-compatible enzyme rules, workflow presets, peptide mass
        and pI calculations, sequence-local cleavage-efficiency
        annotations, and proteome-aware uniqueness scoring. Evaluates
        multi-FASTA files in batches with per-protein triage and
        proteome-level summaries. Exports peptide lists for Skyline and
        generic downstream tools and prints styled console reports.
License: MIT + file LICENSE
URL: https://github.com/LangeLab/pepVet,
        https://langelab.github.io/pepVet/
BugReports: https://github.com/LangeLab/pepVet/issues
Depends: R (>= 4.5.0)
Imports: Biostrings, cleaver, cli, IRanges, rlang, tibble
Suggests: ggplot2, patchwork, ragg, testthat (>= 3.0.0), withr, knitr,
        rmarkdown
VignetteBuilder: knitr
biocViews: Proteomics, MassSpectrometry, QualityControl
Encoding: UTF-8
Config/Needs/build: ggplot2, knitr, patchwork, rmarkdown
Config/Needs/check: rcmdcheck
Config/Needs/coverage: covr, ggplot2, patchwork, ragg, testthat (>=
        3.0.0), withr, xml2
Config/Needs/lint: lintr
Config/Needs/website: ggplot2, knitr, patchwork, pkgdown, ragg,
        rmarkdown
Config/testthat/edition: 3
Roxygen: list(markdown = TRUE)
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: zlib1g-dev
Repository: https://biocstaging.r-universe.dev
Date/Publication: 2026-07-15 03:55:44 UTC
RemoteUrl: https://github.com/BiocStaging/pepVet
RemoteRef: HEAD
RemoteSha: d951d26114bad2e92b063021ea3640c1558e6241
NeedsCompilation: no
Packaged: 2026-07-15 06:46:06 UTC; root
Author: Enes K. Ergin [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-9810-7399>)
Maintainer: Enes K. Ergin <eneskemalergin@gmail.com>