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# CITATION file created with {cffr} R package
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cff-version: 1.2.0
message: 'To cite package "pepitope" in publications use:'
type: software
license: GPL-3.0-only
title: 'pepitope: Extract, QC and Screen Peptide Epitopes'
version: 0.99.2
doi: 10.32614/CRAN.package.pepitope
abstract: Supports T cell receptor neoantigen co-culture screen analysis from peptide
  library design to sequencing quality control and differential abundance testing.
  The package annotates somatic variants and RNA fusions, extracts mutant and reference
  peptide context, prepares barcoded minigene construct tables, counts sample and
  construct barcodes from sequencing data, and identifies immunogenic epitopes in
  dropout screens.
authors:
- family-names: Schubert
  given-names: Michael
  email: mschu.dev@gmail.com
  orcid: https://orcid.org/0000-0002-6862-5221
repository: https://biocstaging.r-universe.dev
repository-code: https://github.com/mschubert/pepitope
commit: 0146b1ec6ca0fa8828e66acd41610bfadd6e4b1e
url: https://github.com/mschubert/pepitope
date-released: '2026-06-18'
contact:
- family-names: Schubert
  given-names: Michael
  email: mschu.dev@gmail.com
  orcid: https://orcid.org/0000-0002-6862-5221