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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "perturbMatchData" in publications use:'
type: software
license: MIT
title: 'perturbMatchData: Reference Perturbation Signatures from GEO RNA-seq Experiments'
version: 0.99.0
doi: 10.32614/CRAN.package.perturbMatchData
abstract: Provides the reference perturbation expression signatures used by the perturbMatch
  package, which ranks the single-gene perturbations whose expression response most
  resembles a query signature. Each reference signature summarises the differential
  expression observed after a single-gene perturbation (knockdown, knockout or overexpression)
  in a human RNA-seq experiment deposited in the Gene Expression Omnibus. Signatures
  are summarised either by the characteristic direction method or by limma, each with
  and without surrogate variable analysis batch correction, giving four datasets served
  as HDF5-backed SummarizedExperiment objects.
authors:
- family-names: Soul
  given-names: Jamie
  email: jamie.soul@liverpool.ac.uk
  orcid: https://orcid.org/0000-0003-2255-6459
repository: https://biocstaging.r-universe.dev
repository-code: https://github.com/soulj/perturbMatchData
commit: 02b61aa9c7638cccb73e3ddef512635f7e382f3f
url: https://github.com/soulj/perturbMatchData
date-released: '2026-08-07'
contact:
- family-names: Soul
  given-names: Jamie
  email: jamie.soul@liverpool.ac.uk
  orcid: https://orcid.org/0000-0003-2255-6459