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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "prolfqua" in publications use:'
type: software
license: MIT
title: 'prolfqua: Proteomics Label Free Quantification'
version: 0.99.2
doi: 10.1021/acs.jproteome.2c00441
identifiers:
- type: doi
  value: 10.32614/CRAN.package.prolfqua
abstract: 'The prolfqua package integrates essential steps of the mass spectrometry
  based label free quantification data analysis workflow: quality control, data normalization,
  protein aggregation, modeling, hypothesis testing and sample size estimation. We
  use prolfqua to : develop highly customizable, visually appealing, and interactive
  data analysis reports in pdf or HTML format; to visualize and model simple experimental
  designs with a single explanatory variable and complex experiments with multiple
  factors; to benchmark data acquisition, data preprocessing or data modeling methods.
  We developed and improved the package by applying the "Eating your own dog food"
  principle, when analysing dozens of proteomics datasets.'
authors:
- family-names: Wolski
  given-names: Witold
  email: witold.wolski@fgcz.uzh.ch
  orcid: https://orcid.org/0000-0002-6468-120X
- family-names: Panse
  given-names: Christian
  email: cp@fgcz.ethz.ch
  orcid: https://orcid.org/0000-0003-1975-3064
preferred-citation:
  type: article
  title: 'prolfqua : A Comprehensive R-Package for Proteomics Differential Expression
    Analysis'
  authors:
  - family-names: Wolski
    given-names: Witold Eryk
    email: wew@fgcz.ethz.ch
  - family-names: Nanni
    given-names: Paolo
    email: paolo.nanni@fgcz.uzh.ch
  - family-names: Grossmann
    given-names: Jonas
    email: jg@fgcz.ethz.ch
  - family-names: d'Errico
    given-names: Maria
    email: maria.derrico@fgcz.ethz.ch
  - family-names: Schlapbach
    given-names: Ralph
    email: ralph.schlapbach@fgcz.uzh.ch
  - family-names: Panse
    given-names: Christian
    email: cp@fgcz.ethz.ch
    orcid: https://orcid.org/0000-0003-1975-3064
  journal: J. Proteome Res. 2023, 22, 4, 1092-1104
  year: '2023'
  month: '3'
  doi: 10.1021/acs.jproteome.2c00441
repository: https://biocstaging.r-universe.dev
repository-code: https://github.com/fgcz/prolfqua
commit: e4e36d5bc553824ea82a5100ad6889b4e6d4f07d
url: https://fgcz.github.io/prolfqua/
date-released: '2026-10-09'
contact:
- family-names: Panse
  given-names: Christian
  email: cp@fgcz.ethz.ch
  orcid: https://orcid.org/0000-0003-1975-3064