# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "rvarsim" in publications use:'
type: software
license: MIT
title: 'rvarsim: R/Bioconductor Variant Simulator with HGVS Notation'
version: 0.99.1
abstract: 'Simulates all possible single nucleotide variants (SNVs) across MANE Select
  transcripts including coding sequence (CDS), untranslated regions (UTRs), and canonical
  splice sites. Outputs variants in HGVS notation. Provides a comprehensive HGVS toolkit:
  parsing, syntactic and semantic validation, normalization (3'' shifting, common
  affix trimming), format conversion (HGVS <-> VCF <-> SPDI), transcription mapping
  (genomic <-> coding), translation to protein consequence, backtranslation from protein
  to coding variants, variant extraction from sequence alignment, and liftover between
  genome assemblies.'
authors:
- family-names: Sun
  given-names: Liu
  email: sunliu@yxnu.edu.cn
  orcid: https://orcid.org/0000-0002-1459-9478
preferred-citation:
  type: manual
  title: 'rvarsim: R/Bioconductor Variant Simulator with HGVS Notation'
  authors:
  - family-names: Sun
    given-names: Liu
    email: sunliu@yxnu.edu.cn
    orcid: https://orcid.org/0000-0002-1459-9478
  year: '2026'
  notes: R package version 0.99.1
  url: https://github.com/liu-sun/rvarsim
repository: https://biocstaging.r-universe.dev
repository-code: https://github.com/liu-sun/rvarsim
commit: 7b0d289dedbea6448b59f9f74ead186b79b02e60
url: https://github.com/liu-sun/rvarsim
date-released: '2026-06-10'
contact:
- family-names: Sun
  given-names: Liu
  email: sunliu@yxnu.edu.cn
  orcid: https://orcid.org/0000-0002-1459-9478