Package: saintexpress Title: Pure R Implementation of SAINTexpress Version: 0.99.0 Authors@R: c( person("Witold", "Wolski", , "witold.wolski@fgcz.uzh.ch", role = "cre", comment = c(ORCID = "0000-0002-6468-120X")), person("Alexey", "Nesvizhskii", , "nesvi@med.umich.edu", role = "aut"), person("Hyungwon", "Choi", , "hyung_won_choi@nuhs.edu.sg", role = c("aut", "cph"), comment = "Author and copyright holder of the original SAINTexpress C++ implementation"), person("Damian", "Fermin", , role = c("aut", "cph"), comment = "Author and copyright holder of the original SAINTexpress C++ implementation")) Description: A pure R implementation of the SAINTexpress scoring engines for affinity purification-mass spectrometry data, covering both the spectral-count and intensity models, together with validation of SAINT input tables. The output mirrors the native SAINTexpress 'list.txt' format, so protein-protein interactions can be scored without external binaries. The underlying method is described in Teo et al. (2014) . License: GPL (>= 3) URL: https://prolfqua.github.io/saintexpress/, https://github.com/prolfqua/saintexpress BugReports: https://github.com/prolfqua/saintexpress/issues Encoding: UTF-8 Roxygen: list(markdown = TRUE) RoxygenNote: 7.3.3 Suggests: BiocStyle, knitr, nloptr, pkgdown, rmarkdown, testthat (>= 3.0.0) Config/testthat/edition: 3 Imports: stats VignetteBuilder: knitr biocViews: MassSpectrometry, Proteomics, Software Repository: https://biocstaging.r-universe.dev Date/Publication: 2026-08-27 14:27:48 UTC RemoteUrl: https://github.com/BiocStaging/saintexpress RemoteRef: HEAD RemoteSha: 8731469af7d23d85edde288f18d180ac6ce0800d NeedsCompilation: no Packaged: 2026-09-26 09:52:05 UTC; root Author: Witold Wolski [cre] (ORCID: ), Alexey Nesvizhskii [aut], Hyungwon Choi [aut, cph] (Author and copyright holder of the original SAINTexpress C++ implementation), Damian Fermin [aut, cph] (Author and copyright holder of the original SAINTexpress C++ implementation) Maintainer: Witold Wolski