Licence changed from MIT to GPL (>= 3). The package is a derivative work of the GPL-3-or-later SAINTexpress C++ sources, so a permissive licence was not applicable. Hyungwon Choi and Damian Fermin are now credited as authors and copyright holders.
Attribution added: the README now documents that this package is an AI-assisted port of the GPL-3 licensed SAINTexpress C++ sources by Hyungwon Choi and Damian Fermin.
BiocStyle moved from Imports to Suggests; it is only used to build the vignette.
Author credits updated: Alexey Nesvizhskii is credited as an author, Witold Wolski is now the maintainer.
Intensity scoring now handles constant complete control profiles with the median-control-SD fallback used by native SAINTexpress, while reporting the affected prey identifiers.
Initial pure-R implementation of SAINTexpress spectral-count and intensity scoring with SAINT input validation.