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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "saintexpress" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'saintexpress: Pure R Implementation of SAINTexpress'
version: 0.99.0
doi: 10.1016/j.jprot.2013.10.023
identifiers:
- type: doi
  value: 10.32614/CRAN.package.saintexpress
abstract: A pure R implementation of the SAINTexpress scoring engines for affinity
  purification-mass spectrometry data, covering both the spectral-count and intensity
  models, together with validation of SAINT input tables. The output mirrors the native
  SAINTexpress 'list.txt' format, so protein-protein interactions can be scored without
  external binaries. The underlying method is described in Teo et al. (2014) <https://doi.org/10.1016/j.jprot.2013.10.023>.
authors:
- family-names: Wolski
  given-names: Witold
  email: witold.wolski@fgcz.uzh.ch
  orcid: https://orcid.org/0000-0002-6468-120X
- family-names: Nesvizhskii
  given-names: Alexey
  email: nesvi@med.umich.edu
- family-names: Choi
  given-names: Hyungwon
  email: hyung_won_choi@nuhs.edu.sg
- family-names: Fermin
  given-names: Damian
preferred-citation:
  type: article
  title: 'SAINTexpress: Improvements and additional features in Significance Analysis
    of INTeractome software'
  authors:
  - family-names: Teo
    given-names: Guoci
  - family-names: Liu
    given-names: Guomin
  - family-names: Zhang
    given-names: Jianping
  - family-names: Nesvizhskii
    given-names: Alexey I.
  - family-names: Gingras
    given-names: Anne-Claude
  - family-names: Choi
    given-names: Hyungwon
    email: hyung_won_choi@nuhs.edu.sg
  journal: Journal of Proteomics
  year: '2014'
  volume: '100'
  doi: 10.1016/j.jprot.2013.10.023
  start: '37'
  end: '43'
repository: https://biocstaging.r-universe.dev
repository-code: https://github.com/prolfqua/saintexpress
commit: 8731469af7d23d85edde288f18d180ac6ce0800d
url: https://prolfqua.github.io/saintexpress/
date-released: '2026-08-27'
contact:
- family-names: Wolski
  given-names: Witold
  email: witold.wolski@fgcz.uzh.ch
  orcid: https://orcid.org/0000-0002-6468-120X