Package: scDonorAudit
Title: Audit Donor Influence in Single-Cell Pseudobulk Analyses
Version: 0.99.9
Authors@R: person(
    given = "Fuhao",
    family = "Jiang",
    role = c("aut", "cre"),
    email = "emr39515@gmail.com",
    comment = c(ORCID = "0009-0009-8836-8494"))
Description: Audits sample and donor design for two-condition
        single-cell pseudobulk differential expression analyses. Fits
        an edgeR quasi-likelihood model to each cell type and repeats
        the analysis after omitting each donor. Links planned donor
        omissions to design checks, fit outcomes and observed
        gene-effect changes. Provides descriptive summaries of
        donor-deletion sensitivity together with the coverage of valid
        effects.
License: Artistic-2.0
URL: https://github.com/Emr-27/scDonorAudit
BugReports: https://github.com/Emr-27/scDonorAudit/issues
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
biocViews: SingleCell, RNASeq, GeneExpression, DifferentialExpression,
        QualityControl, Software
Imports: edgeR, ggplot2, IRanges, Matrix, methods, rlang, S4Vectors,
        SingleCellExperiment, stats, SummarizedExperiment
Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 3.2.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
Config/roxygen2/version: 8.1.0
Config/pak/sysreqs: zlib1g-dev
Repository: https://biocstaging.r-universe.dev
Date/Publication: 2026-10-08 09:42:54 UTC
RemoteUrl: https://github.com/BiocStaging/scDonorAudit
RemoteRef: HEAD
RemoteSha: ae6e56ac8d8e772d91c78e6587e238b6667fe819
NeedsCompilation: no
Packaged: 2026-10-08 16:44:26 UTC; root
Author: Fuhao Jiang [aut, cre] (ORCID: <https://orcid.org/0009-0009-8836-8494>)
Maintainer: Fuhao Jiang <emr39515@gmail.com>