Package: scGenePanel
Title: Multi-panel visualization for single cell expression data
Version: 0.99.0
Authors@R: c(
    person(
        given = "Shristi",
        family = "Shrestha",
        email = "shristi.shrestha.2@vanderbilt.edu",
        role = c("aut"),
        comment = c(ORCID = "0000-0003-4519-1712")),
    person(
        given = "Jean-Philippe",
        family = "Cartailler",
        email = "jp.cartailler@vanderbilt.edu",
        role = c("aut", "cre"),
        comment = c(ORCID = "0000-0002-0312-2391"))
    )
License: AGPL-3 + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Description: scGenePanel creates coordinated, gene-centric multi-panel
        visualizations for single-cell RNA-seq data stored in Seurat or
        SingleCellExperiment objects. It combines group-stratified UMAP
        embeddings, cell-type-specific expression distributions, and
        quantitative cell-frequency and expression summaries in a
        single figure. An accompanying Shiny application supports
        interactive exploration using the same workflow.
Depends: R (>= 4.0.0)
Imports: methods, stats, Seurat (>= 4.1.1), SingleCellExperiment,
        SummarizedExperiment, dplyr, magrittr, ggplot2, ggpubr,
        ggforce, ggthemes, ggsci, cowplot, patchwork, grid, gridExtra,
        flextable, RColorBrewer, scales, scCustomize, shiny,
        shinydashboard, shinyjs, shinyWidgets
Suggests: knitr, rmarkdown, BiocManager, testthat (>= 3.0.0), BiocStyle
biocViews: Software, GeneExpression, SingleCell, Visualization,
        DimensionReduction, Transcriptomics
Config/testthat/edition: 3
VignetteBuilder: knitr
BugReports: https://github.com/vandydata/scGenePanel/issues
URL: https://github.com/vandydata/scGenePanel
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev libfribidi-dev libglpk-dev make
        libharfbuzz-dev libicu-dev libjpeg-dev libpng-dev libtiff-dev
        libuv1-dev libwebp-dev libxml2-dev libssl-dev python3
        zlib1g-dev
Repository: https://biocstaging.r-universe.dev
Date/Publication: 2026-09-08 01:06:56 UTC
RemoteUrl: https://github.com/BiocStaging/scGenePanel
RemoteRef: HEAD
RemoteSha: 172d0bd70d73bbdc0508573f8a93c2ad61247520
NeedsCompilation: no
Packaged: 2026-10-08 07:59:42 UTC; root
Author: Shristi Shrestha [aut] (ORCID: <https://orcid.org/0000-0003-4519-1712>),
  Jean-Philippe Cartailler [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-0312-2391>)
Maintainer: Jean-Philippe Cartailler <jp.cartailler@vanderbilt.edu>