Changes in version 0.99.1 - BiocCheck cleanup for Bioconductor review: runnable examples added to guidematrix_to_triplet, scmageck_best_lambda and scmageck_eff_estimate; \value sections added to assign_cell_identity, featurePlot, selectPlot; 1:n replaced with seq_len()/seq_along(); biocViews: Sequencing added; expanded package Description; vignette chunk labels + sessionInfo(). Changes in version 0.99.0 - Full compatibility with Seurat v5 / SeuratObject >= 5. - Seurat objects are updated with UpdateSeuratObject() on read, so objects saved by older Seurat versions no longer error with no slot of name "images". - Replaced the defunct slot= argument of GetAssayData() and FetchData() with layer= (defunct in SeuratObject >= 5.4). - The bundled example object is now stored in the Seurat v5 format. - DESCRIPTION now requires Seurat (>= 5.0.0). - Compiled code (RRA) now writes diagnostics to the R console via Rcpp::Rcout/Rcpp::Rcerr/Rprintf instead of std::cout/printf. - R CMD check / BiocCheck clean-up (dead code, namespace, docs, examples). - Version reset to 0.99.0 for Bioconductor resubmission.