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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "scMAGeCK" in publications use:'
type: software
license: BSD-2-Clause
title: 'scMAGeCK: Identify genes associated with multiple expression phenotypes in
  single-cell CRISPR screening data'
version: 0.99.1
doi: 10.32614/CRAN.package.scMAGeCK
abstract: 'scMAGeCK is a computational model to identify genes associated with multiple
  expression phenotypes from CRISPR screening coupled with single-cell RNA sequencing
  data (e.g. CROP-seq, Perturb-seq). It provides two complementary modules: a rank-based
  test (scMAGeCK-RRA) that links a perturbation to a single marker or gene signature,
  and a linear-regression test (scMAGeCK-LR) that estimates the effect of each perturbation
  on the expression of all genes. The package also estimates single-cell perturbation-response
  scores to capture heterogeneous perturbation effects across individual cells.'
authors:
- family-names: Li
  given-names: Wei
  email: li.david.wei@gmail.com
- family-names: Cheng
  given-names: Xiaolong
  email: xiaolongcheng1120@gmail.com
- family-names: Yang
  given-names: Lin
repository: https://biocstaging.r-universe.dev
repository-code: https://github.com/weili-lab/scMAGeCK
commit: e24aa0f3c9734c26ffbc200107adf0e199b26208
url: https://github.com/weili-lab/scMAGeCK
date-released: '2026-07-09'
contact:
- family-names: Li
  given-names: Wei
  email: li.david.wei@gmail.com