Package: scOverlay
Type: Package
Title: Multilayer plots for single-cell data
Version: 0.99.0
Authors@R: 
    c(person(given = "Bernat", family = "Gel", role = c("aut", "cre", "fnd"),
             email = "bgel@igtp.cat",
             comment = c(ORCID = "0000-0001-8878-349X")))
Description: scOverlay provides publication-grade plotting helpers to
        display a foreground feature (gene expression or metadata) on
        top of a contextual background (clusters, cell types, samples,
        or a solid colour) in the same reduced dimension panel, each
        with independent colour scales (via ggnewscale). It integrates
        with SingleCellExperiment / SummarizedExperiment, supports
        flexible subsetting of foreground cells, multiple assays (e.g.
        counts, logcounts), and grid arrangements by user-defined
        grouping columns.
License: Artistic-2.0
Encoding: UTF-8
Depends: R (>= 4.5.0)
Imports: ggplot2, ggnewscale, SummarizedExperiment,
        SingleCellExperiment, viridisLite, scales, RColorBrewer,
        patchwork, ggrastr, rlang
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), BiocStyle
VignetteBuilder: knitr
Roxygen: list(markdown = TRUE)
URL: https://github.com/bernatgel/scOverlay
BugReports: https://github.com/bernatgel/scOverlay/issues
biocViews: Software, Visualization, SingleCell, Transcriptomics,
        GeneExpression, DataRepresentation
Config/testthat/edition: 3
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: libcairo2-dev libfontconfig1-dev libfreetype6-dev
        libfribidi-dev libharfbuzz-dev libicu-dev libjpeg-dev
        libpng-dev libtiff-dev libwebp-dev zlib1g-dev
Repository: https://biocstaging.r-universe.dev
Date/Publication: 2026-06-02 16:25:12 UTC
RemoteUrl: https://github.com/BiocStaging/scOverlay
RemoteRef: HEAD
RemoteSha: a1e68884d4f118b0d2a8fc2588aceb464fba3935
NeedsCompilation: no
Packaged: 2026-10-07 09:16:07 UTC; root
Author: Bernat Gel [aut, cre, fnd] (ORCID:
    <https://orcid.org/0000-0001-8878-349X>)
Maintainer: Bernat Gel <bgel@igtp.cat>