Package: selexprepR
Title: Preprocessing Public HT-SELEX Sequencing Data
Version: 0.99.6
Authors@R: 
    person(given = "Marco", family = "Rota Negroni",
           email = "marco.rotanegroni@gmail.com",
           role = c("aut", "cre"))
Description: Provides reproducible preprocessing for high-throughput
        SELEX sequencing data. Supports primer inference, extraction of
        random regions, sparse sequence counting across rounds, quality
        control, and provenance manifests. Public-study discovery and
        checksum-aware ENA FASTQ download planning are included for
        reproducible data acquisition.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Depends: R (>= 4.5.0)
Imports: Biostrings, digest, httr2, jsonlite, Matrix, S4Vectors,
        SummarizedExperiment, withr, xml2
Suggests: arrow, BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
biocViews: Software, DataImport, Preprocessing, QualityControl,
        Sequencing
Config/testthat/edition: 3
URL: https://github.com/marcorotanegroni/selexprepR
BugReports: https://github.com/marcorotanegroni/selexprepR/issues
Config/pak/sysreqs: libxml2-dev libssl-dev zlib1g-dev
Repository: https://biocstaging.r-universe.dev
Date/Publication: 2026-10-14 20:14:34 UTC
RemoteUrl: https://github.com/BiocStaging/selexprepR
RemoteRef: HEAD
RemoteSha: c2f7abdc07a12278bb2c459f064f119f0cb7f7e1
NeedsCompilation: no
Packaged: 2026-10-14 22:31:25 UTC; root
Author: Marco Rota Negroni [aut, cre]
Maintainer: Marco Rota Negroni <marco.rotanegroni@gmail.com>