Package: seqRdna
Title: Tools for Calculating for rDNA in Sequencing Data
Version: 0.99.5
Authors@R: c(
    person(
      given = "Daniel", 
      family = "Vaughan", 
      role = c("aut", "cre"), 
      email = "daniel.1.vaughan@kcl.ac.uk",
      comment = c(ORCID = "0009-0001-6165-2024")
    ),
    person(
        given = "Medical Research Council (MRC)",
        role = "fnd"
    )
    )
Description: Functions for working with rDNA data generated from
        sequencing experiments. The package includes functions to
        calculate the relative rDNA copy number from coverage data, as
        well as functions to calculate the absolute rDNA copy number
        using methylation data.
Depends: R (>= 4.5.0)
Imports: methylKit, GenomicRanges, IRanges, S4Vectors, methods, glmmTMB
License: MIT + file LICENSE
Encoding: UTF-8
URL: https://github.com/MuscleOmicsLab/seqRdna
BugReports: https://github.com/MuscleOmicsLab/seqRdna/issues
Config/roxygen2/version: 8.1.1
Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)
Config/testthat/edition: 3
VignetteBuilder: knitr
biocViews: Software, DNAMethylation, Epigenetics, CopyNumberVariation,
        Sequencing, Coverage
Config/pak/sysreqs: cmake make libbz2-dev libicu-dev liblzma-dev
        libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://biocstaging.r-universe.dev
Date/Publication: 2026-11-02 12:25:32 UTC
RemoteUrl: https://github.com/BiocStaging/seqRdna
RemoteRef: HEAD
RemoteSha: 056ef164e484158823c2bb3b9d44009fb0dbb388
NeedsCompilation: no
Packaged: 2026-11-02 18:44:47 UTC; root
Author: Daniel Vaughan [aut, cre] (ORCID:
    <https://orcid.org/0009-0001-6165-2024>),
  Medical Research Council (MRC) [fnd]
Maintainer: Daniel Vaughan <daniel.1.vaughan@kcl.ac.uk>