Package: spliceTerrain
Type: Package
Title: Sashimi-Style RNA-seq Coverage and Junction Visualisation
Version: 0.99.0
Authors@R: c(
    person(
        "Lachlan", "Baer",
        email = "bioc@lwwb.dev",
        role = c("aut", "cre"),
        comment = c(ORCID = "0000-0001-5213-3401")
    )
  )
Description: Provides tools to visualise RNA sequencing alignments as
        sashimi-style plots showing fragment coverage and splice
        junction usage across genomic regions. Alignments from BAM
        files are summarised into coverage tracks and junction arcs,
        which can be displayed alongside transcript annotations. Plots
        can use compressed genomic coordinates to emphasise observed or
        annotated features and support visual inspection of local
        splicing variation across samples.
License: GPL-3
Encoding: UTF-8
RoxygenNote: 8.0.0
Config/testthat/edition: 3
URL: https://github.com/baerlachlan/spliceTerrain,
        https://baerlachlan.github.io/spliceTerrain/
BugReports: https://github.com/baerlachlan/spliceTerrain/issues
BiocType: Software
biocViews: Alignment, AlternativeSplicing, Coverage, GenomicVariation,
        RNASeq, Sequencing, SplicedAlignment, Transcriptomics,
        Visualization
VignetteBuilder: knitr
Depends: R (>= 4.5),
Imports: BiocGenerics, GenomicAlignments, GenomicRanges, ggplot2,
        IRanges, patchwork, rlang, Rsamtools, S4Vectors, scales,
        Seqinfo,
Suggests: AnnotationFilter, BiocStyle, EnsDb.Hsapiens.v75, ensembldb,
        GenomeInfoDb, knitr, pander, rmarkdown,
        RNAseqData.HNRNPC.bam.chr14, testthat (>= 3.0.0)
Config/pak/sysreqs: libbz2-dev liblzma-dev xz-utils zlib1g-dev
Repository: https://biocstaging.r-universe.dev
Date/Publication: 2026-11-05 04:24:35 UTC
RemoteUrl: https://github.com/BiocStaging/spliceTerrain
RemoteRef: HEAD
RemoteSha: f25d497f8e5ed9032e5c83339d90c1240c4c02d4
NeedsCompilation: no
Packaged: 2026-11-05 11:27:47 UTC; root
Author: Lachlan Baer [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-5213-3401>)
Maintainer: Lachlan Baer <bioc@lwwb.dev>