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# CITATION.cff file created with {cffr} R package
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cff-version: 1.2.0
message: 'To cite package "strainspy" in publications use:'
type: software
license: MIT
title: 'strainspy: Strain Level Microbiome Wide Association Studies'
version: 0.99.0
doi: 10.32614/CRAN.package.strainspy
abstract: Fits statistical models to detect microbial strains associated with a phenotype.
  For small sample sizes, models can be fitted using empirical Bayes maximum a posteriori
  (MAP) priors to improve detection power. Supports various experimental design scenarios,
  including repeated measures.
authors:
- family-names: Tonkin-Hill
  given-names: Gerry
  email: g.tonkinhill@gmail.com
- family-names: Mallawarachchi
  given-names: Sudaraka
  email: smallawaarachchi@gmail.com
  orcid: https://orcid.org/0000-0001-8899-3323
repository: https://biocstaging.r-universe.dev
repository-code: https://github.com/gtonkinhill/strainspy
commit: 73c9b1854f4011f427bd6ea93141566787c973c7
url: https://sudaraka88.r-universe.dev/strainspy
date-released: '2026-09-03'
contact:
- family-names: Mallawarachchi
  given-names: Sudaraka
  email: smallawaarachchi@gmail.com
  orcid: https://orcid.org/0000-0001-8899-3323