Package: superintervalsr
Type: Package
Title: Fast, Memory-Efficient Interval Operations for Genomics
Version: 0.99.7
Authors@R: person("Kez", "Cleal",
                  email = "clealk@cardiff.ac.uk",
                  role = c("aut", "cre"),
                  comment = c(ORCID = "0000-0002-9775-3476"))
Description: Provides a fast, memory-efficient data structure for
        interval intersection queries using a novel superset-index
        approach. SuperIntervals maintains intervals in position-sorted
        order, enabling cache-friendly searches and SIMD-optimized
        counting operations. Chromosome- and strand-aware indexes
        support repeated genomic queries while retaining GRanges
        metadata.
License: MIT + file LICENSE
URL: https://github.com/kcleal/superintervalsr
BugReports: https://github.com/kcleal/superintervalsr/issues
biocViews: Infrastructure, DataRepresentation, GenomeAnnotation,
        Sequencing
Depends: R (>= 4.5.0)
Imports: Rcpp (>= 1.0.0), S4Vectors, IRanges, GenomicRanges, methods
LinkingTo: Rcpp
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), airway,
        SummarizedExperiment
SystemRequirements: C++17
Encoding: UTF-8
Language: en-US
VignetteBuilder: knitr
Config/roxygen2/version: 8.1.1
Config/testthat/edition: 3
Roxygen: list(markdown = TRUE)
Repository: https://biocstaging.r-universe.dev
Date/Publication: 2026-10-14 11:58:48 UTC
RemoteUrl: https://github.com/BiocStaging/superintervalsr
RemoteRef: HEAD
RemoteSha: cdc952b28e44282145030dc9058d33fd7309bbf6
NeedsCompilation: yes
Packaged: 2026-10-14 18:54:11 UTC; root
Author: Kez Cleal [aut, cre] (ORCID: <https://orcid.org/0000-0002-9775-3476>)
Maintainer: Kez Cleal <clealk@cardiff.ac.uk>