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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "woven" in publications use:'
type: software
license: MIT
title: 'woven: Weighted Omics View Embedding via Nystrom for Incomplete Multi-Omics
  Data'
version: 0.99.0
doi: 10.32614/CRAN.package.woven
abstract: Supervised multi-omics integration for block-missing ("ragged") data. WOVEN
  learns a shared latent space across V omics modalities using only fully-observed
  anchor subjects, then projects block-missing subjects via Nystrom extension without
  feature-level imputation. Supervision via label-augmented cross-covariance (analogous
  to DIABLO) with optional sparse projection matrices (PMD). Designed for comparative
  effectiveness research where intersection-only methods introduce selection bias.
authors:
- family-names: Bresette
  given-names: Nathan
  email: nathanbresette04@gmail.com
  orcid: https://orcid.org/0009-0003-1554-6006
- family-names: Lin
  given-names: Ai-Ling
- family-names: Cheng
  given-names: Jianlin
repository: https://biocstaging.r-universe.dev
repository-code: https://github.com/NathanBresette/woven
commit: 3a4f0cc5ab3070cb30eb20dd1ca2efc82553bef0
url: https://github.com/NathanBresette/woven
date-released: '2026-06-24'
contact:
- family-names: Bresette
  given-names: Nathan
  email: nathanbresette04@gmail.com
  orcid: https://orcid.org/0009-0003-1554-6006