Package: ConvergeR 0.99.0

Paul de Boissier

ConvergeR: Whitfield Convergence Score and Seurat Metadata Association

Calculates the convergence score defined by Whitfield et al. 2026 (doi: 10.1158/0008-5472.CAN-25-4403). It allows visualization of this score alongside qualitative and quantitative Seurat object metadata via barplots and density curves, and runs appropriate statistical tests for associations.

Authors:Paul de Boissier [aut, cre]

ConvergeR_0.99.0.tar.gz
ConvergeR_0.99.0.zip(r-4.7-any)ConvergeR_0.99.0.zip(r-4.6-any)ConvergeR_0.99.0.zip(r-4.5-any)
ConvergeR_0.99.0.tgz(r-4.6-any)ConvergeR_0.99.0.tgz(r-4.5-any)
ConvergeR_0.99.0.tar.gz(r-4.7-any)ConvergeR_0.99.0.tar.gz(r-4.6-any)
ConvergeR_0.99.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ConvergeR/json (API)

# Install 'ConvergeR' in R:

install.packages('ConvergeR', repos = c('https://biocstaging.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/pauldeboissier1/converger/issues

On CRAN:

software singlecell transcriptomics geneexpression

2.00 score 6 exports 142 dependencies

Last updated from:708d09dbba. Checks:1 WARNING, 9 OK. Indexed: yes.

Target	Result	Time
bioc-checks	WARNING	199
linux-devel	OK	295
source / vignettes	OK	327
linux-release	OK	261
macos-release	OK	139
macos-oldrel	OK	211
windows-devel	OK	238
windows-release	OK	198
windows-oldrel	OK	211
wasm-release	OK	151

Exports:CalculateConvergedScore PlotConvergenceCrossedProportion PlotConvergenceDensity PlotConvergenceProportion TestConvergenceScore TestMultivariateConvergence

Dependencies:abind askpass base64enc BH bitops bslib cachem caTools cli cluster codetools commonmark cowplot cpp11 crosstalk curl data.table deldir digest dotCall64 dplyr dqrng evaluate farver fastDummies fastmap fitdistrplus FNN fontawesome fs future future.apply generics ggplot2 ggrepel ggridges globals glue goftest gplots gridExtra gtable gtools here highr htmltools htmlwidgets httpuv httr ica igraph irlba isoband jquerylib jsonlite KernSmooth knitr labeling later lattice lazyeval lifecycle listenv lmtest magrittr MASS Matrix matrixStats memoise mime miniUI nlme openssl otel parallelly patchwork pbapply pillar pkgconfig plotly plyr png polyclip progressr promises purrr R6 RANN rappdirs RColorBrewer Rcpp RcppAnnoy RcppArmadillo RcppEigen RcppHNSW RcppProgress RcppTOML reshape2 reticulate rlang rmarkdown ROCR rprojroot RSpectra Rtsne S7 sass scales scattermore sctransform Seurat SeuratObject shiny sitmo sourcetools sp spam spatstat.data spatstat.explore spatstat.geom spatstat.random spatstat.sparse spatstat.univar spatstat.utils stringi stringr survival sys tensor tibble tidyr tidyselect tinytex utf8 uwot vctrs viridisLite withr xfun xtable yaml zoo

Introduction to ConvergeR

Rendered fromIntroduction_to_ConvergeR.Rmdusingknitr::rmarkdown

Last update: 2026-09-23
Started: 2026-09-23

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Calculate Converged Score	CalculateConvergedScore
Plot Convergence Crossed Proportion	PlotConvergenceCrossedProportion
Plot Convergence Density	PlotConvergenceDensity
Plot Convergence Proportion	PlotConvergenceProportion
Test Convergence Score	TestConvergenceScore
Test Multivariate Convergence	TestMultivariateConvergence