Package: MsBackendMassIVE 0.99.0

Gabriele Tomè

MsBackendMassIVE: Retrieve Mass Spectrometry Data from MassIVE

MassIVE is one of the main public repositories for storage of metabolomics experiments. The MsBackendMassIVE package provides functionality to retrieve and represent mass spectrometry (MS) data from MassIVE. Data files are downloaded and cached locally avoiding repetitive downloads. MS data from metabolomics experiments can thus be directly and seamlessly integrated into R-based analysis workflows with the Spectra and MsBackendMassIVE package.

Authors:Gabriele Tomè [aut, cre], Philippine Louail [aut], Johannes Rainer [aut]

MsBackendMassIVE_0.99.0.tar.gz
MsBackendMassIVE_0.99.0.zip(r-4.7)MsBackendMassIVE_0.99.0.zip(r-4.6)MsBackendMassIVE_0.99.0.zip(r-4.5)
MsBackendMassIVE_0.99.0.tgz(r-4.6-any)MsBackendMassIVE_0.99.0.tgz(r-4.5-any)
MsBackendMassIVE_0.99.0.tar.gz(r-4.7-any)MsBackendMassIVE_0.99.0.tar.gz(r-4.6-any)
MsBackendMassIVE_0.99.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
MsBackendMassIVE/json (API)

# Install 'MsBackendMassIVE' in R:
install.packages('MsBackendMassIVE', repos = c('https://biocstaging.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rformassspectrometry/msbackendmassive/issues

On CRAN:

Conda:

infrastructuremassspectrometrymetabolomicsdataimportproteomics

4.00 score 2 scripts 14 exports 68 dependencies

Last updated from:38b9f6aec5. Checks:1 NOTE, 9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE171
linux-devel-x86_64OK614
source / vignettesOK251
linux-release-x86_64OK557
macos-release-arm64OK522
macos-oldrel-arm64OK603
windows-develOK673
windows-releaseOK667
windows-oldrelOK697
wasm-releaseOK143

Exports:backendInitializebackendRequiredSpectraVariablesgnps2_querygnps2_usi_download_linkmassive_cached_data_filesmassive_delete_cachemassive_download_filemassive_ftp_pathmassive_list_filesmassive_number_filesmassive_param_filemassive_syncmassive_sync_data_filesMsBackendMassIVE

Dependencies:askpassBHBiocFileCacheBiocGenericsBiocParallelbitbit64blobcachemcliclueclustercodetoolscpp11crayoncurldata.tableDBIdbplyrdplyrfastmapfilelockformatRfsfutile.loggerfutile.optionsgenericsgluehmshttrhttr2IRangesjsonlitelambda.rlifecyclemagrittrMASSmemoiseMetaboCoreUtilsmimeMsCoreUtilsopensslpillarpkgconfigprettyunitsprogressProtGenericspurrrR6rappdirsRcpprlangRSQLitervestS4VectorsselectrsnowSpectrastringistringrsystibbletidyrtidyselectutf8vctrswithrxml2

Retrieve and Use Mass Spectrometry Data from MassIVE

Rendered fromMsBackendMassIVE.Rmdusingknitr::rmarkdownon Jun 08 2026.

Last update: 2026-04-23
Started: 2026-03-18

Readme and manuals

Help Manual

Help pageTopics
Query the GNPS2 datasetchache resourceGNPS2-utils gnps2_query gnps2_usi_download_link
Utility functions for the MassIVE repositoryMassIVE-utils massive_cached_data_files massive_delete_cache massive_download_file massive_ftp_path massive_list_files massive_number_files massive_param_file massive_sync_data_files
MsBackend representing MS data from MassIVEbackendInitialize,MsBackendMassIVE-method backendRequiredSpectraVariables,MsBackendMassIVE-method massive_sync MsBackendMassIVE MsBackendMassIVE-class