Package: PlantTxDbHub 0.99.1

Kabilan S

PlantTxDbHub: AnnotationHub‑based TxDb databases for Arabidopsis, rice, and soybean

Provides TxDb (transcript database) annotations for three plant species: Arabidopsis thaliana (TAIR10), Oryza sativa (IRGSP‑1.0), and Glycine max (Wm82 v2.1), all based on Ensembl Plants release 62. The SQLite files are hosted on Zenodo and are retrieved on‑demand via AnnotationHub, keeping the package lightweight.

Authors:Dwijesh Chandra Mishra [aut], Kabilan S [aut, cre], Sharanbasappa D Madival [ctb], ICAR-IARI [fnd]

PlantTxDbHub_0.99.1.tar.gz
PlantTxDbHub_0.99.1.zip(r-4.7)PlantTxDbHub_0.99.1.zip(r-4.6)PlantTxDbHub_0.99.1.zip(r-4.5)
PlantTxDbHub_0.99.1.tgz(r-4.6-any)PlantTxDbHub_0.99.1.tgz(r-4.5-any)
PlantTxDbHub_0.99.1.tar.gz(r-4.7-any)PlantTxDbHub_0.99.1.tar.gz(r-4.6-any)
PlantTxDbHub_0.99.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
PlantTxDbHub/json (API)
NEWS

# Install 'PlantTxDbHub' in R:
install.packages('PlantTxDbHub', repos = c('https://biocstaging.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/kabilanbio/planttxdbhub/issues

On CRAN:

Conda:

annotationdataannotationhubtxdbarabidopsis_thalianaoryza_sativaglycine_maxsequenceannotation

2.70 score 1 exports 56 dependencies

Last updated from:166603121f. Checks:8 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE171
linux-devel-x86_64NOTE148
source / vignettesOK262
linux-release-x86_64NOTE177
macos-release-arm64NOTE249
macos-oldrel-arm64NOTE134
windows-develNOTE226
windows-releaseNOTE109
windows-oldrelNOTE110
wasm-releaseOK155

Exports:downloadPlantTxDbs

Dependencies:AnnotationDbiAnnotationHubaskpassBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocManagerBiocVersionBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrdplyrfastmapfilelockgenericsgluehttrhttr2IRangesjsonliteKEGGRESTlifecyclemagrittrmemoisemimeopensslpillarpkgconfigpngpurrrR6rappdirsrlangRSQLiteS4VectorsSeqinfostringistringrsystibbletidyrtidyselectutf8vctrswithrXVectoryaml

Local Analysis of Plant Genomes with PlantTxDbHub

Kabilan S

Rendered fromPlantTxDbHub.Rmdusingknitr::rmarkdownon Jun 10 2026.

Last update: 2026-06-09
Started: 2026-06-09