Package: SpatialData.plot 0.99.9

Helena L. Crowell

SpatialData.plot: SpatialData visualization

Visualization suit for 'spatialdataR'. Current functionality includes handling of multiscale 'images', visualizing 'labels', 'points', and 'shapes'. For the latter, POINT, POLYGON, and MULTIPOLYGON geometries are supported. For all but 'images', there is support to pass information from annotation 'tables' as aesthetics (e.g., 'colData' or 'assay' data).

Authors:Helena L. Crowell [aut, cre], Artür Manukyan [aut], Hugo Gruson [aut], Charlotte Soneson [aut], Michael Stadler [aut], Vince Carey [aut]

SpatialData.plot_0.99.9.tar.gz
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manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
SpatialData.plot/json (API)

# Install 'SpatialData.plot' in R:

install.packages('SpatialData.plot', repos = c('https://biocstaging.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/helenalc/spatialdata.plot/issues

On CRAN:

spatial singlecell visualization infrastructure immunooncology geneexpression transcriptomics

4.81 score 26 scripts 6 exports 97 dependencies

Last updated from:de488f5c15. Checks:6 NOTE, 2 OK, 2 ERROR. Indexed: yes.

Target	Result	Time
bioc-checks	NOTE	195
linux-devel	NOTE	285
source / vignettes	OK	296
linux-release	NOTE	363
macos-release	NOTE	214
macos-oldrel	ERROR	265
windows-devel	NOTE	300
windows-release	NOTE	278
windows-oldrel	ERROR	287
wasm-release	OK	159

Exports:plotImage plotLabel plotPoint plotShape plotSpatialData scalebar

Dependencies:abind anndataR arrow askpass assertthat base64enc BH Biobase BiocGenerics bit bit64 blob class classInt cli cpp11 curl DBI dbplyr DelayedArray digest dplyr duckdb duckspatial e1071 farver generics GenomicRanges geoarrow ggnewscale ggplot2 glue graph grumpy gtable here httr2 IRanges isoband jsonlite KernSmooth labeling lattice lifecycle magrittr Matrix MatrixGenerics matrixStats nanoarrow openssl paws.common paws.storage pillar pkgconfig png proxy purrr R.methodsS3 R.oo R.utils R6 rappdirs Rarr RBGL RColorBrewer Rcpp RcppTOML reticulate rlang rprojroot s2 S4Arrays S4Vectors S7 scales Seqinfo sf SingleCellExperiment SparseArray spatialdataR stringi stringr SummarizedExperiment sys tibble tidyr tidyselect units utf8 uuid vctrs viridisLite withr wk xml2 XVector ZarrArray

SpatialData.plot

Rendered fromSpatialData.plot.Rmdusingknitr::rmarkdown

Last update: 2026-10-09
Started: 2024-11-23

Help page	Topics
`SpatialData` .zarr toy datasets	blobs
Add image layer to SpatialData plot	plotImage
Add label layer to SpatialData plot	plotLabel
Add point layer to SpatialData plot	plotPoint
Add shape layer to SpatialData plot	plotShape
Plot a SpatialData object	plotSpatialData
Add scalebar to plot	scalebar

Package: SpatialData.plot 0.99.9

SpatialData.plot: SpatialData visualization

Citation

Development and contributors

Readme and manuals

Help Manual

Usage by other packages (reverse dependencies)