Package: TxDb.Athaliana.Ensembl.TAIR10 0.99.5

Kabilan S

TxDb.Athaliana.Ensembl.TAIR10: Transcripts Annotation Database for Arabidopsis thaliana

TxDb.Athaliana.Ensembl.TAIR10 provides transcript, exon, CDS, and gene annotations for Arabidopsis thaliana based on the TAIR10 reference genome and Ensembl Plants release 63. The TxDb object is built from the Ensembl Plants GFF3 annotation and can be queried using GenomicFeatures accessors such as genes(), transcripts(), exonsBy(), and cdsBy().

Authors:Dwijesh Chandra Mishra [aut], Kabilan S [aut, cre], ICAR-IARI [fnd]

# Install 'TxDb.Athaliana.Ensembl.TAIR10' in R:

install.packages('TxDb.Athaliana.Ensembl.TAIR10', repos = c('https://biocstaging.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/kabilanbio/txdb.athaliana.ensembl.tair10/issues

On CRAN:

annotationdata txdb arabidopsis_thaliana sequenceannotation annotationhub

3.18 score 0 exports 77 dependencies

Last updated from:22a2190744. Checks:1 NOTE, 9 OK. Indexed: yes.

Target	Result	Time
bioc-checks	NOTE	195
linux-devel	OK	251
source / vignettes	OK	272
linux-release	OK	213
macos-release	OK	225
macos-oldrel	OK	257
windows-devel	OK	178
windows-release	OK	169
windows-oldrel	OK	188
wasm-release	OK	120

Exports:

Dependencies:AnnotationDbi AnnotationHub askpass BH Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocIO BiocManager BiocParallel BiocVersion Biostrings bit bit64 bitops blob cachem cigarillo cli codetools cpp11 crayon curl DBI dbplyr dplyr fastmap filelock formatR futile.logger futile.options generics GenomicAlignments GenomicFeatures GenomicRanges glue httr httr2 IRanges jsonlite KEGGREST lambda.r lifecycle magrittr memoise mime openssl pillar pkgconfig png purrr R6 rappdirs RCurl restfulr Rhtslib rjson rlang Rsamtools RSQLite rtracklayer S4Vectors Seqinfo snow stringi stringr sys tibble tidyr tidyselect utf8 vctrs withr XML XVector yaml

TxDb.Athaliana.Ensembl.TAIR10

Rendered fromvignette.Rmdusingknitr::rmarkdown

Last update: 2026-09-04
Started: 2026-08-08

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Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Annotation package for TxDb object(s)	TxDb.Athaliana.Ensembl.TAIR10-package TxDb.Athaliana.Ensembl.TAIR10 TxDb.Athaliana.Ensembl.TAIR10_dbconn TxDb.Athaliana.Ensembl.TAIR10_dbfile TxDb.Athaliana.Ensembl.TAIR10_dbInfo TxDb.Athaliana.Ensembl.TAIR10_dbschema