Package: bigWig 0.99.0

Prerequisites | Introduction | Getting started | Installation | Install from GitHub | Install from a local directory | Usage | bigWig utilities | bigWig format | load.bigWig | print.bigWig | unload.bigWig | query.bigWig | bigWig file structure | bpQuery and probeQuery | region query | operations (op) | sum op='sum' | maximum op='max' | minimum op='min' | average op='avg' | weighted average op='wavg' | abs.value | gap.value | BED utilities and transformations | BED format | Load BED file | center, fiveprime, and threeprime functions | fiveprime and threeprime functions | downstream, upstream | foreach | bed and bed6 region queries | bed.region | bed6.region | Step queries | bed.step | bed6.step | Mappability | bwMap as an argument in bpQuery.bigWig functions | Metaprofiles | quantiles | subsampling | confidence intervals | bootstraped confidence intervals | metaprofile | plots.bigWig | Matrix Scaling | RPKM | Density to One | Max to one | Zero to one | metaprofile with a matrix.op | Session Info