Package: fastPLS 0.99.3

Stefano Cacciatore
fastPLS: Fast Partial Least Squares for High-Dimensional Data
Fast implementations of partial least squares models for high-dimensional regression and classification. The package provides compiled implementations of PLS-SVD, SIMPLS, OPLS and kernel PLS, together with truncated singular value decomposition backends, discriminant classifiers, cross-validation utilities and optional CUDA or Apple Metal acceleration when the required system libraries are available.
Authors:
fastPLS_0.99.3.tar.gz
fastPLS_0.99.3.zip(r-4.7)fastPLS_0.99.3.zip(r-4.6)fastPLS_0.99.3.zip(r-4.5)
fastPLS_0.99.3.tgz(r-4.6-x86_64)fastPLS_0.99.3.tgz(r-4.6-arm64)fastPLS_0.99.3.tgz(r-4.5-x86_64)fastPLS_0.99.3.tgz(r-4.5-arm64)
fastPLS_0.99.3.tar.gz(r-4.7-arm64)fastPLS_0.99.3.tar.gz(r-4.7-x86_64)fastPLS_0.99.3.tar.gz(r-4.6-arm64)fastPLS_0.99.3.tar.gz(r-4.6-x86_64)
fastPLS_0.99.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
fastPLS/json (API)
| # Install 'fastPLS' in R: |
| install.packages('fastPLS', repos = c('https://biocstaging.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/tkcaccia/fastpls/issues
softwaredimensionreductionclassificationregressiongeneexpressionmetabolomicssinglecellgpuopenblascpp
Last updated from:ef4aa0e4ea. Checks:1 WARNING, 13 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 323 | ||
| linux-devel-arm64 | OK | 436 | ||
| linux-devel-x86_64 | OK | 353 | ||
| source / vignettes | OK | 540 | ||
| linux-release-arm64 | OK | 430 | ||
| linux-release-x86_64 | OK | 355 | ||
| macos-release-arm64 | OK | 216 | ||
| macos-release-x86_64 | OK | 438 | ||
| macos-oldrel-arm64 | OK | 239 | ||
| macos-oldrel-x86_64 | OK | 693 | ||
| windows-devel | OK | 311 | ||
| windows-release | OK | 293 | ||
| windows-oldrel | OK | 304 | ||
| wasm-release | OK | 224 |
Exports:evaluatefastcorfastsvdhas_cudahas_metalpcaplot.permutationplspls.double.cvpls.single.cvViP
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Breast-cancer mRNA subtype example | breast |
| Colon cancer gene-expression example | colon |
| Evaluate prediction performance | evaluate |
| Fast Pearson Correlation | fastcor |
| Singular value decomposition through fastPLS backends | fastsvd |
| Check CUDA Runtime Availability for fastPLS | has_cuda |
| Check Apple Metal Backend Availability for fastPLS | has_metal |
| Principal component analysis through fastPLS SVD backends | pca |
| Plot PCA or PLS scores | plot.fastPLS plot.fastPLSPCA |
| Plot PLS permutation-test R2 and Q2 values | plot.permutation |
| Partial Least Squares with selectable model family and backend | pls |
| Nested cross-validation for PLS | pls.double.cv |
| Single cross-validation for PLS component optimization | pls.single.cv |
| Predict from fitted fastPLS models | predict.fastPLS predict.fastPLSKernel predict.fastPLSOpls |
| Project new data with a fitted fastPLS PCA model | predict.fastPLSPCA |
| Variable importance in projection (VIP) | ViP |