Package: geneslator 0.99.2

Giovanni Micale

geneslator: Geneslator, a tool for accurate gene name conversion

Geneslator is a comprehensive R package that performs gene identifier conversion and ortholog mapping. The tool integrates multiple cross-organism databases (NCBI, Ensembl, UniProt, GO, KEGG, Reactome, Wikipathways) and organism-specific resources within a single, coherent framework. Geneslator currently supports the following organisms: human, mouse, rat, yeast, worm, fly, zebrafish and arabidopsis.

Authors:Giovanni Micale [aut, cre], Giulia Cavallaro [aut], Grete Francesca Privitera [aut]

geneslator_0.99.2.tar.gz
geneslator_0.99.2.zip(r-4.7)geneslator_0.99.2.zip(r-4.6)geneslator_0.99.2.zip(r-4.5)
geneslator_0.99.2.tgz(r-4.6-any)geneslator_0.99.2.tgz(r-4.5-any)
geneslator_0.99.2.tar.gz(r-4.7-any)geneslator_0.99.2.tar.gz(r-4.6-any)
geneslator_0.99.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
geneslator/json (API)
NEWS

# Install 'geneslator' in R:

install.packages('geneslator', repos = c('https://biocstaging.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/knowmics-lab/geneslator/issues

On CRAN:

orgdb organismdb annotationdata homo_sapiens mus_musculus rattus_norvegicus caenorhabditis_elegans saccharomyces_cerevisiae drosophila_melanogaster danio_rerio arabidopsis_thaliana organism zebrafish packagetype

3.78 score 9 scripts 8 exports 44 dependencies

Last updated from:f84386d9dd. Checks:1 NOTE, 9 OK. Indexed: yes.

Target	Result	Time
bioc-checks	NOTE	173
linux-devel-x86_64	OK	737
source / vignettes	OK	350
linux-release-x86_64	OK	736
macos-release-arm64	OK	975
macos-oldrel-arm64	OK	595
windows-devel	OK	391
windows-release	OK	828
windows-oldrel	OK	616
wasm-release	OK	116

Exports:availableDatabases availableVersions columns GeneslatorDb keys keytypes mapIds select

Dependencies:AnnotationDbi askpass Biobase BiocGenerics Biostrings bit bit64 blob cachem cli cpp11 crayon curl DBI fastmap filelock generics glue httr IRanges jsonlite KEGGREST keyring lifecycle memoise mime openssl pkgconfig plyr png R6 Rcpp rlang RSQLite S4Vectors Seqinfo sys utf8 vctrs XML xml2 XVector yaml zen4R

Geneslator: an R package for comprehensive gene identifier conversion and annotation

Giovanni Micale, Giulia Cavallaro, Grete Francesca Privitera

Rendered fromgeneslator.Rmdusingknitr::rmarkdownon Jun 12 2026.

Last update: 2026-06-11
Started: 2026-02-07

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Available databases in geneslator	availableDatabases
Available database versions in geneslator	availableVersions
GeneslatorDb class	GeneslatorDb GeneslatorDb-class
List values of a column in the annotation databases of geneslator	keys keys,GeneslatorDb-method
List available columns in the annotation databases of geneslator	columns columns,GeneslatorDb-method keytypes keytypes,GeneslatorDb-method
Map data from the annotation databases of geneslator	mapIds mapIds,GeneslatorDb-method
Extract data from the annotation databases of geneslator	select select,GeneslatorDb-method