Package: pgen2gds 0.99.2

Xiuwen Zheng

pgen2gds: Format Conversion from PLINK2 PGEN to GDS

Provides functions for the format conversion from PLINK2 pgen files to SeqArray GDS files.

Authors:Xiuwen Zheng [aut, cre]

pgen2gds_0.99.2.tar.gz
pgen2gds_0.99.2.zip(r-4.7)pgen2gds_0.99.2.zip(r-4.6)pgen2gds_0.99.2.zip(r-4.5)
pgen2gds_0.99.2.tgz(r-4.6-x86_64)pgen2gds_0.99.2.tgz(r-4.6-arm64)pgen2gds_0.99.2.tgz(r-4.5-x86_64)pgen2gds_0.99.2.tgz(r-4.5-arm64)
pgen2gds_0.99.2.tar.gz(r-4.7-arm64)pgen2gds_0.99.2.tar.gz(r-4.7-x86_64)pgen2gds_0.99.2.tar.gz(r-4.6-arm64)pgen2gds_0.99.2.tar.gz(r-4.6-x86_64)
pgen2gds_0.99.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
pgen2gds/json (API)
NEWS

# Install 'pgen2gds' in R:
install.packages('pgen2gds', repos = c('https://biocstaging.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/zhengxwen/pgen2gds/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

infrastructuredataimportgeneticscpp

3.81 score 3 scripts 2 exports 14 dependencies

Last updated from:f61fcafcb3. Checks:4 NOTE, 10 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE161
linux-devel-arm64OK161
linux-devel-x86_64OK178
source / vignettesOK197
linux-release-arm64OK162
linux-release-x86_64OK173
macos-release-arm64OK126
macos-release-x86_64OK232
macos-oldrel-arm64NOTE102
macos-oldrel-x86_64NOTE278
windows-develOK208
windows-releaseOK207
windows-oldrelNOTE194
wasm-releaseOK110

Exports:seqPGEN2GDSseqReadPVAR

Dependencies:BiocGenericsBiostringscrayondigestgdsfmtgenericsGenomicRangesIRangespgenlibrRcppS4VectorsSeqArraySeqinfoXVector

Format Conversion from PLINK2 PGEN to SeqArray GDS

Xiuwen Zheng

Rendered frompgen2gds.Rmdusingknitr::rmarkdownon Jun 06 2026.

Last update: 2026-04-12
Started: 2026-04-11