Package: remart 0.99.6

Hugo Gruson

remart: Reimplementation of the 'biomaRt' Package Using Modern Ensembl APIs

This package aims to offer a drop-in replacement to biomaRt using the same interface but the more modern and better maintained APIs provided by Ensembl. It provides an easy solution for compatibility with minimal changes for existing projects and packages. New projects may prefer to use another approach which is not constrained by the need for backward compatibility with biomaRt.

Authors:Hugo Gruson [aut, cre], German Network for Bioinformatics Infrastructure - de.NBI [fnd]

remart_0.99.6.tar.gz
remart_0.99.6.zip(r-4.7-any)remart_0.99.6.zip(r-4.6-any)remart_0.99.6.zip(r-4.5-any)
remart_0.99.6.tgz(r-4.6-any)remart_0.99.6.tgz(r-4.5-any)
remart_0.99.6.tar.gz(r-4.7-any)remart_0.99.6.tar.gz(r-4.6-any)
remart_0.99.6.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
remart/json (API)

# Install 'remart' in R:
install.packages('remart', repos = c('https://biocstaging.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/huber-group-embl/remart/issues

Pkgdown/docs site:https://huber-group-embl.github.io

On CRAN:

Conda:

annotationdataimport

4.13 score 4 scripts 5 exports 13 dependencies

Last updated from:54993a4995. Checks:1 ERROR, 9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR146
linux-develOK136
source / vignettesOK236
linux-releaseOK121
macos-releaseOK114
macos-oldrelOK113
windows-develOK71
windows-releaseOK80
windows-oldrelOK72
wasm-releaseOK94

Exports:getBMgetGenegetLDSgetSequencelistAttributes

Dependencies:askpassclicurlgluehttr2lifecyclemagrittropensslR6rlangsysvctrswithr

Comparison between remart and biomaRt
Interface | New species / speciesL argument | New version argument
Rendered frombiomaRt_comparison.Rmdusingknitr::rmarkdown

Last update: 2026-10-12
Started: 2026-08-18

Introduction to remart
Overview | Installation and loading | Discover supported attributes | Retrieve gene annotations | Retrieve transcript-level annotations | Use the getGene() compatibility wrapper | Retrieve sequences | Find orthologues | Migrating common r BiocStyle::Biocpkg("biomaRt") code | Roadmap and future direction | Session information
Rendered fromremart.Rmdusingknitr::rmarkdown

Last update: 2026-10-12
Started: 2026-08-14

Design principles for the remart package
Function names, signatures, and return values | FAQ | Why a new package?
Rendered fromdesign.Rmdusingknitr::rmarkdown

Last update: 2026-08-18
Started: 2026-03-13