Package: CySA 0.99.7

Bernd Jagla

CySA: Interactive Cluster Selector for Cytometry Data

Provides an interactive Shiny application for selecting and visualizing clusters from flow cytometry data stored in SingleCellExperiment objects.

Authors:Bernd Jagla [aut, cre]

CySA_0.99.7.tar.gz
CySA_0.99.7.zip(r-4.7)CySA_0.99.7.zip(r-4.6)CySA_0.99.7.zip(r-4.5)
CySA_0.99.7.tgz(r-4.6-any)CySA_0.99.7.tgz(r-4.5-any)
CySA_0.99.7.tar.gz(r-4.7-any)CySA_0.99.7.tar.gz(r-4.6-any)
CySA_0.99.7.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
CySA/json (API)
NEWS

# Install 'CySA' in R:
install.packages('CySA', repos = c('https://biocstaging.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/baj12/cysa/issues

On CRAN:

Conda:

singlecellflowcytometryclusteringvisualizationshinyapps

2.70 score 6 exports 227 dependencies

Last updated from:4e0520d025. Checks:1 NOTE, 9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE264
linux-devel-x86_64OK523
source / vignettesOK379
linux-release-x86_64OK473
macos-release-arm64OK271
macos-oldrel-arm64OK232
windows-develOK432
windows-releaseOK452
windows-oldrelOK425
wasm-releaseOK209

Exports:clusterSelectorCySA_default_cluster_colsCySA_example_sceplotScatterBJplotSOMScatterprepClusterSelectorData

Dependencies:abindALLaskpassassortheadbackportsbase64encbeachmatbeeswarmBHBiobaseBiocGenericsbiocmakeBiocNeighborsBiocParallelBiocSingularbootbroombslibcachemCairocarcarDataCATALYSTcirclizecliclueclustercodetoolscollapsibleTreecolorRampscolorspacecommonmarkComplexHeatmapConsensusClusterPluscorrplotcowplotcpp11crayoncrosstalkcurlcytolibdata.tabledata.treeDelayedArraydendextendDerivdigestdir.expirydoBydoParalleldplyrdqrngdrcDTevaluatefarverfastmapfilelockflowCoreFlowSOMFNNfontawesomeforeachforecastformatRFormulafracdifffreshfsfutile.loggerfutile.optionsgenericsGenomicRangesGetoptLongggbeeswarmggforceggnewscaleggplot2ggpubrggrastrggrepelggridgesggsciggsignifGlobalOptionsgluegridExtragtablegtoolsherehighrhtmltoolshtmlwidgetshttpuvhttrigraphIRangesirlbaisobanditeratorsjquerylibjsonliteknitrlabelinglambda.rlaterlatticelazyevallifecyclelme4lmtestmagrittrMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmemoisemgcvmicrobenchmarkmimeminqamodelrmultcompmvtnormnlmenloptrnnetnnlsnumDerivopensslotelpbkrtestpheatmappillarpkgconfigplotlyplotrixplyrpngpolyclippolynompromisespurrrquantregR6raggrappdirsrasterrbibutilsRColorBrewerRcppRcppAnnoyRcppArmadilloRcppEigenRcppMLRcppProgressRcppTOMLRdpackreformulasreshape2reticulateRhdf5librjsonrlangrmarkdownrprojrootRProtoBufLibRSpectrarstatixrstudioapirsvdRtsneS4ArraysS4VectorsS7sandwichsassScaledMatrixscalesscaterscuttleSeqinfoshapeshinyshinydashboardshinydashboardPlusshinyjquishinyjsSingleCellExperimentsitmosnowsourcetoolsspSparseArraySparseMstringistringrSummarizedExperimentsurvivalsyssystemfontsterratextshapingTH.datatibbletidyrtidyselecttimeDatetinytextweenrumapurcautf8uwotvctrsviporviridisviridisLitewaiterwithrxfunXMLxtableXVectoryamlzoo

Introduction to CySA

Rendered fromintro.Rmdusingknitr::rmarkdownon Jun 21 2026.

Last update: 2026-06-21
Started: 2026-06-19