Package: GENCODEHub 0.99.0

Paul Ruiz Pinto

GENCODEHub: GENCODE AnnotationHub

Provides access through AnnotationHub to genomic annotation resources derived from GENCODE releases. The release 50 collection represents every feature type in the human GRCh38.p14 GTF. Feature-specific GRanges objects retain the imported identifiers and attributes, while a TxDb resource supports gene, transcript, exon, and coding-sequence queries.

Authors:Paul Ruiz Pinto [aut, cre]

GENCODEHub_0.99.0.tar.gz
GENCODEHub_0.99.0.zip(r-4.7-any)GENCODEHub_0.99.0.zip(r-4.6-any)GENCODEHub_0.99.0.zip(r-4.5-any)
GENCODEHub_0.99.0.tgz(r-4.6-any)GENCODEHub_0.99.0.tgz(r-4.5-any)
GENCODEHub_0.99.0.tar.gz(r-4.7-any)GENCODEHub_0.99.0.tar.gz(r-4.6-any)
GENCODEHub_0.99.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
GENCODEHub/json (API)

# Install 'GENCODEHub' in R:

install.packages('GENCODEHub', repos = c('https://biocstaging.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/paulyrp/gencodehub/issues

On CRAN:

annotationdata annotationhub genomicsequence homo_sapiens packagetype sequenceannotation txdb

2.70 score 4 scripts 3 exports 77 dependencies

Last updated from:183b1a52f7. Checks:10 OK. Indexed: yes.

Target	Result	Time
bioc-checks	OK	171
linux-devel	OK	242
source / vignettes	OK	308
linux-release	OK	305
macos-release	OK	325
macos-oldrel	OK	212
windows-devel	OK	243
windows-release	OK	248
windows-oldrel	OK	240
wasm-release	OK	138

Exports:gencodeResources gencodeV50 gencodeV50Resources

Dependencies:AnnotationDbi AnnotationHub askpass BH Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocIO BiocManager BiocParallel BiocVersion Biostrings bit bit64 bitops blob cachem cigarillo cli codetools cpp11 crayon curl DBI dbplyr dplyr fastmap filelock formatR futile.logger futile.options generics GenomicAlignments GenomicFeatures GenomicRanges glue httr httr2 IRanges jsonlite KEGGREST lambda.r lifecycle magrittr memoise mime openssl pillar pkgconfig png purrr R6 rappdirs RCurl restfulr Rhtslib rjson rlang Rsamtools RSQLite rtracklayer S4Vectors Seqinfo snow stringi stringr sys tibble tidyr tidyselect utf8 vctrs withr XML XVector yaml

GENCODE AnnotationHub

Rendered fromGENCODEHub.Rmdusingknitr::rmarkdown

Last update: 2026-08-08
Started: 2026-08-04

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Discover GENCODE resources	gencodeResources
Retrieve a GENCODE v50 annotation resource	gencodeV50
GENCODE release 50 AnnotationHub resources	AH122277 AH122278 AH122279 AH122280 AH122281 AH122282 AH122283 AH122284 AH122285 AH122286 GENCODEv50-resources
Discover GENCODE v50 resources	gencodeV50Resources