Introduction | Installation | Importing MS Data from Metabolomics Workbench | General use and information retrieval from Metabolomics Workbench | Session information
Package: MsBackendMetabolomicsWorkbench 0.99.0
Gabriele Tomè
MsBackendMetabolomicsWorkbench: Retrieve Mass Spectrometry Data from Metabolomics Workbench
Metabolomics Workbench is one of the main public repositories for storage of metabolomics experiments. The MsBackendMetabolomicsWorkbench package provides functionality to retrieve and represent mass spectrometry (MS) data from Metabolomics Workbench. Data files are downloaded and cached locally avoiding repetitive downloads. MS data from metabolomics experiments can thus be directly and seamlessly integrated into R-based analysis workflows with the Spectra and MsBackendMetabolomicsWorkbench package.
Authors:
MsBackendMetabolomicsWorkbench_0.99.0.tar.gz
MsBackendMetabolomicsWorkbench_0.99.0.zip(r-4.7)MsBackendMetabolomicsWorkbench_0.99.0.zip(r-4.6)MsBackendMetabolomicsWorkbench_0.99.0.zip(r-4.5)
MsBackendMetabolomicsWorkbench_0.99.0.tgz(r-4.6-any)MsBackendMetabolomicsWorkbench_0.99.0.tgz(r-4.5-any)
MsBackendMetabolomicsWorkbench_0.99.0.tar.gz(r-4.7-any)MsBackendMetabolomicsWorkbench_0.99.0.tar.gz(r-4.6-any)
MsBackendMetabolomicsWorkbench_0.99.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
MsBackendMetabolomicsWorkbench/json (API)
| # Install 'MsBackendMetabolomicsWorkbench' in R: |
| install.packages('MsBackendMetabolomicsWorkbench', repos = c('https://biocstaging.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/rformassspectrometry/msbackendmetabolomicsworkbench/issues
infrastructuremassspectrometrymetabolomicsdataimportproteomics
Last updated from:d1577176da. Checks:1 NOTE, 7 OK, 2 ERROR. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | NOTE | 164 | ||
| linux-devel-x86_64 | OK | 384 | ||
| source / vignettes | OK | 253 | ||
| linux-release-x86_64 | OK | 435 | ||
| macos-release-arm64 | OK | 392 | ||
| macos-oldrel-arm64 | OK | 318 | ||
| windows-devel | ERROR | 291 | ||
| windows-release | OK | 477 | ||
| windows-oldrel | ERROR | 232 | ||
| wasm-release | OK | 180 |
Exports:backendInitializebackendRequiredSpectraVariablesMsBackendMetabolomicsWorkbenchmwb_cached_data_filesmwb_delete_cachemwb_ftp_downloadmwb_ftp_list_filesmwb_list_filesmwb_metadatamwb_rest_requestmwb_syncmwb_sync_data_files
Dependencies:archiveaskpassBHBiocFileCacheBiocGenericsBiocParallelbitbit64blobcachemcliclueclustercodetoolscpp11curldata.tableDBIdbplyrdplyrfastmapfilelockformatRfsfutile.loggerfutile.optionsgenericsgluehttrhttr2IRangesjsonlitelambda.rlifecyclemagrittrMASSmemoiseMetaboCoreUtilsmimeMsCoreUtilsopensslpillarpkgconfigplyrProtGenericspurrrR6rappdirsRcpprlangRSQLitervestS4VectorsselectrsnowSpectrastringistringrsystibbletidyrtidyselectutf8vctrswithrxml2
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Utility functions for the Metabolomics Workbench repository | MetabolomicsWorkbench-utils mwb_cached_data_files mwb_delete_cache mwb_ftp_download mwb_ftp_list_files mwb_list_files mwb_metadata mwb_rest_request mwb_sync_data_files |
| MsBackend representing MS data from Metabolomics Workbench | backendInitialize,MsBackendMetabolomicsWorkbench-method backendRequiredSpectraVariables,MsBackendMetabolomicsWorkbench-method MsBackendMetabolomicsWorkbench MsBackendMetabolomicsWorkbench-class mwb_sync |
