Package: TxDb.Gmax.JGI.Gmv4 0.99.1

Kabilan S

TxDb.Gmax.JGI.Gmv4: Transcripts Annotation Database for Soybean

TxDb.Gmax.JGI.Gmv4 provides transcript, exon, and CDS annotations for soybean (Glycine max Wm82.a4.v1). It is a Bioconductor TxDb object built from the official JGI/Phytozome GFF3 annotation and is available via AnnotationHub (retrievable with AnnotationHub()); after loading you can use GenomicFeatures accessors (genes(), transcripts(), exonsBy(), cdsBy()) to extract gene models identified by JGI/Phytozome locus IDs.

Authors:Dwijesh Chandra Mishra [aut], Kabilan S [aut, cre], ICAR-IARI [fnd]

TxDb.Gmax.JGI.Gmv4_0.99.1.tar.gz
TxDb.Gmax.JGI.Gmv4_0.99.1.zip(r-4.7-any)TxDb.Gmax.JGI.Gmv4_0.99.1.zip(r-4.6-any)TxDb.Gmax.JGI.Gmv4_0.99.1.zip(r-4.5-any)
TxDb.Gmax.JGI.Gmv4_0.99.1.tgz(r-4.6-any)TxDb.Gmax.JGI.Gmv4_0.99.1.tgz(r-4.5-any)
TxDb.Gmax.JGI.Gmv4_0.99.1.tar.gz(r-4.7-any)TxDb.Gmax.JGI.Gmv4_0.99.1.tar.gz(r-4.6-any)
TxDb.Gmax.JGI.Gmv4_0.99.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
TxDb.Gmax.JGI.Gmv4/json (API)

# Install 'TxDb.Gmax.JGI.Gmv4' in R:

install.packages('TxDb.Gmax.JGI.Gmv4', repos = c('https://biocstaging.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/kabilanbio/txdb.gmax.jgi.gmv4/issues

On CRAN:

annotationdata txdb glycine_max sequenceannotation annotationhub

3.18 score 0 exports 77 dependencies

Last updated from:d6537e9eab. Checks:1 NOTE, 9 OK. Indexed: yes.

Target	Result	Time
bioc-checks	NOTE	196
linux-devel	OK	274
source / vignettes	OK	286
linux-release	OK	244
macos-release	OK	227
macos-oldrel	OK	145
windows-devel	OK	125
windows-release	OK	157
windows-oldrel	OK	230
wasm-release	OK	125