Scope | Build a relationship table | Map relationships to genomic features | Annotate regions | Summarise without scoring drugs | Session information
Package: drugannotR 0.99.0
Vasileios Lemonidis
drugannotR: Coordinate-Level Pharmacological Annotation of Genomic Regions
Maps genomic regions to gene features and then to traceable drug-gene relationships. The package preserves genomic coordinates, relationship categories, evidence scope, and source provenance. It deliberately reports coordinate-level pharmacological relevance rather than predicting treatment response, efficacy, toxicity, or dose.
Authors:
drugannotR_0.99.0.tar.gz
drugannotR_0.99.0.zip(r-4.7-any)drugannotR_0.99.0.zip(r-4.6-any)drugannotR_0.99.0.zip(r-4.5-any)
drugannotR_0.99.0.tgz(r-4.6-any)drugannotR_0.99.0.tgz(r-4.5-any)
drugannotR_0.99.0.tar.gz(r-4.7-any)drugannotR_0.99.0.tar.gz(r-4.6-any)
drugannotR_0.99.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
drugannotR/json (API)
| # Install 'drugannotR' in R: |
| install.packages('drugannotR', repos = c('https://biocstaging.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/biocstaging/drugannotr/issues
annotationdatarepresentationdataimportgenetargetgenomeannotationpharmacogeneticspharmacogenomicsvariantannotation
Last updated from:cdff92230f. Checks:8 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | NOTE | 236 | ||
| linux-devel | NOTE | 251 | ||
| source / vignettes | OK | 321 | ||
| linux-release | NOTE | 250 | ||
| macos-release | NOTE | 179 | ||
| macos-oldrel | NOTE | 133 | ||
| windows-devel | NOTE | 228 | ||
| windows-release | NOTE | 178 | ||
| windows-oldrel | NOTE | 178 | ||
| wasm-release | OK | 224 |
Exports:annotateDrugRegionsbuildDrugGeneSetsmapDrugGenessummariseDrugAnnotations
Dependencies:AnnotationDbiaskpassBHBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobcachemcigarilloclicodetoolscpp11crayoncurlDBIdbplyrdplyrfastmapfilelockformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomicAlignmentsGenomicFeaturesGenomicRangesgluehttrhttr2IRangesjsonliteKEGGRESTlambda.rlifecyclemagrittrmemoisemimeopensslpillarpkgconfigpngpurrrR6RCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4VectorsSeqinfosnowstringistringrsystibbletidyrtidyselectUCSC.utilsutf8vctrswithrXMLXVectoryaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Annotate genomic regions with pharmacological relationships | annotateDrugRegions |
| Build a controlled drug-gene relationship table | buildDrugGeneSets |
| Map drug-associated genes to genomic features | mapDrugGenes |
| Summarise coordinate-level drug annotations | summariseDrugAnnotations |