Package: methylTFRAnnotationMm10 0.99.12

methylTFRAnnotationMm10: methylTFR Annotations for mm10

Precomputed transcription factor binding sites, motif GC frequency tables and a genome-wide GC distribution for use with the methylTFR package. Binding sites are genome-wide motif matches extended to the footprint window methylTFR reads across; the GC tables record how each motif's sites distribute over genome-wide GC quintiles, which is what allows a deviation score to be corrected for sequence composition. The data are hosted on AnnotationHub and retrieved on first use; this package provides the accessors and the documentation.

Authors:Irem B. Gunduz [aut, cre], ERA-NET Transcan-Neu III - EPILUNAR [fnd], Saarland University [fnd]