Introduction | Installation | Input scope | Basic audit | Audit statuses | Reading a divergence | Reverse traversals | Digests | Walks and mappings | Comprehensive statistics | Diagnostics | Citation | References | Session information
Package: panpathAudit 0.99.2
Anestis Gkanogiannis
panpathAudit: Audit Sequence Preservation in GFA Traversals
Audits source FASTA sequences against named paths and coordinate-aware walks in GFA files. It reports exact recovery, divergence coordinates, digests, and optional base-level statistics. Graph topology is not validated.
Authors:
panpathAudit_0.99.2.tar.gz
panpathAudit_0.99.2.zip(r-4.7-x86_64)panpathAudit_0.99.2.zip(r-4.7-arm64)panpathAudit_0.99.2.zip(r-4.6-x86_64)panpathAudit_0.99.2.zip(r-4.6-arm64)panpathAudit_0.99.2.zip(r-4.5-x86_64)
panpathAudit_0.99.2.tgz(r-4.6-x86_64)panpathAudit_0.99.2.tgz(r-4.6-arm64)panpathAudit_0.99.2.tgz(r-4.5-x86_64)panpathAudit_0.99.2.tgz(r-4.5-arm64)
panpathAudit_0.99.2.tar.gz(r-4.7-arm64)panpathAudit_0.99.2.tar.gz(r-4.7-x86_64)panpathAudit_0.99.2.tar.gz(r-4.6-arm64)panpathAudit_0.99.2.tar.gz(r-4.6-x86_64)
panpathAudit_0.99.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
panpathAudit/json (API)
| # Install 'panpathAudit' in R: |
| install.packages('panpathAudit', repos = c('https://biocstaging.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/gkanogiannis/panpathaudit/issues
alignmentdataimportgenomeassemblygeneticssequencingzlibcpp
Last updated from:03e80adec1. Checks:16 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | OK | 141 | ||
| linux-devel-arm64 | OK | 164 | ||
| linux-devel-x86_64 | OK | 160 | ||
| source / vignettes | OK | 244 | ||
| linux-release-arm64 | OK | 165 | ||
| linux-release-x86_64 | OK | 185 | ||
| macos-release-arm64 | OK | 120 | ||
| macos-release-x86_64 | OK | 263 | ||
| macos-oldrel-arm64 | OK | 155 | ||
| macos-oldrel-x86_64 | OK | 245 | ||
| windows-devel-arm64 | OK | 244 | ||
| windows-devel-x86_64 | OK | 206 | ||
| windows-release-arm64 | OK | 230 | ||
| windows-release-x86_64 | OK | 137 | ||
| windows-oldrel-x86_64 | OK | 163 | ||
| wasm-release | OK | 155 |
Exports:as.data.frameauditGFAauditOutcomesauditProvenanceauditStatisticsauditSummaryauditTelemetryshowsummary
Dependencies:BiocGenericsgenericsRcppS4Vectors
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Audit sequence preservation in GFA traversals | panpathAudit-package panpathAudit |
| Audit FASTA sequences against GFA traversals | auditGFA |
| Audit result class | as.data.frame,PanPathAuditResult-method auditOutcomes auditProvenance auditStatistics auditSummary auditTelemetry PanPathAuditResult-class show,PanPathAuditResult-method summary,PanPathAuditResult-method |
